BioC 3.6: CHECK report for metavizr on veracruz1

Package: metavizr

Version: 1.1.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings metavizr_1.1.2.tar.gz

StartedAt: 2017-08-16 05:25:13 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 05:35:38 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 625.1 seconds

RetCode: 1

Status:  ERROR

CheckDir: metavizr.Rcheck

Warnings: NA

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings metavizr_1.1.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/metavizr.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘metavizr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘metavizr’ version ‘1.1.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘metavizr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘metavizr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: startMetavizStandalone
> ### Title: Start metaviz app in standalone (locally) and create
> ###   'MetavizApp' object to manage connection.
> ### Aliases: startMetavizStandalone
> 
> ### ** Examples
> 
> # see package vignette for example usage
> app <- startMetavizStandalone()
checking for updates to epiviz app...
LSOpenURLsWithRole() failed with error -10810 for the URL http://127.0.0.1:7123/index-standalone.html?websocket-host%5B%5D=ws://127.0.0.1:7123&debug=false&useCookie=false&.
Error in .wait_until_connected(app$server) : 
  [epivizrStandalone] Error starting app. UI unable to connect to websocket server.
Calls: startMetavizStandalone ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.6-bioc/meat/metavizr.Rcheck/00check.log’
for details.

* installing *source* package ‘metavizr’ ...
** R
** inst
** preparing package for lazy loading
No methods found in "RSQLite" for requests: dbGetQuery
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "RSQLite" for requests: dbGetQuery
* DONE (metavizr)

name	user	system	elapsed
EpivizMetagenomicsData-class	17.402	0.482	17.923
generateSelection	0.002	0.001	0.001
metavizControl	0.002	0.000	0.001
setMetavizStandalone	2.456	1.730	4.524
startMetaviz	0.133	0.000	0.137