Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.6: BUILD BIN report for flowPeaks on veracruz1

This page was generated on 2017-08-16 13:42:58 -0400 (Wed, 16 Aug 2017).

Package 469/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.21.0
Yongchao Ge
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowPeaks
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: flowPeaks
Version: 1.21.0
Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowPeaks_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowPeaks.buildbin-libdir
StartedAt: 2017-08-16 10:23:00 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 10:23:30 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 30.2 seconds
RetCode: 0
Status:  OK 
PackageFile: flowPeaks_1.21.0.tgz
PackageFileSize: 4.103 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowPeaks_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowPeaks.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowPeaks.buildbin-libdir flowPeaks_1.21.0.tar.gz'
>>>>>>> 

* installing *source* package ‘flowPeaks’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c Rpack.cpp -o Rpack.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c Rregistrate.cpp -o Rregistrate.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp:803:5: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses]
        if(!triangulate & plot & !debug)
           ^            ˜
VoronoiDiagramGenerator.cpp:803:5: note: add parentheses after the '!' to evaluate the bitwise operator first
        if(!triangulate & plot & !debug)
           ^
            (                 )
VoronoiDiagramGenerator.cpp:803:5: note: add parentheses around left hand side expression to silence this warning
        if(!triangulate & plot & !debug)
           ^
           (           )
1 warning generated.
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c flowPeaks.cpp -o flowPeaks.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c func_collect.cpp -o func_collect.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c func_collect_supp.cpp -o func_collect_supp.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c kd_tree.cpp -o kd_tree.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c kmns.cpp -o kmns.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowPeaks)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"