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BioC 3.6: CHECK report for flowCore on malbec1

This page was generated on 2017-08-16 13:17:45 -0400 (Wed, 16 Aug 2017).

Package 460/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCore 1.43.5
M.Jiang
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowCore
Last Changed Rev: 131018 / Revision: 131943
Last Changed Date: 2017-07-06 14:35:33 -0400 (Thu, 06 Jul 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowCore
Version: 1.43.5
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings flowCore_1.43.5.tar.gz
StartedAt: 2017-08-15 23:08:40 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 23:11:47 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 186.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: flowCore.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings flowCore_1.43.5.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/flowCore.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowCore/DESCRIPTION’ ... OK
* this is package ‘flowCore’ version ‘1.43.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... NOTE
Found the following apparent object files/libraries:
  src/boost_regex/c_regex_traits.o src/boost_regex/cpp_regex_traits.o
  src/boost_regex/cregex.o src/boost_regex/fileiter.o
  src/boost_regex/icu.o src/boost_regex/instances.o
  src/boost_regex/posix_api.o src/boost_regex/regex.o
  src/boost_regex/regex_debug.o src/boost_regex/regex_raw_buffer.o
  src/boost_regex/regex_traits_defaults.o
  src/boost_regex/static_mutex.o src/boost_regex/usinstances.o
  src/boost_regex/w32_regex_traits.o src/boost_regex/wc_regex_traits.o
  src/boost_regex/wide_posix_api.o src/boost_regex/winstances.o
Object files/libraries should not be included in a source package.
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowCore’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.2Mb
  sub-directories of 1Mb or more:
    data      5.0Mb
    extdata   1.1Mb
    lib      20.5Mb
    libs      5.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Versioned 'LinkingTo' value for ‘BH’ is only usable in R >= 3.0.2
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘Rgraphviz’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
rbind2,flowSet-flowSet: warning in assign(i, x[[i]], env = env):
  partial argument match of 'env' to 'envir'
rbind2,flowSet-flowSet: warning in assign(i, y[[i]], env = env):
  partial argument match of 'env' to 'envir'
%in%,flowFrame-norm2Filter: no visible global function definition for
  ‘cov.rob’
spillover,flowSet: no visible global function definition for
  ‘devAskNewPage’
spillover,flowSet : <anonymous>: no visible global function definition
  for ‘rangeGate’
spillover,flowSet : <anonymous>: no visible global function definition
  for ‘density’
spillover,flowSet : <anonymous>: no visible global function definition
  for ‘abline’
spillover,flowSet : <anonymous> : <anonymous>: no visible global
  function definition for ‘density’
split,flowFrame-factor: no visible binding for global variable ‘i’
summary,workFlow: no visible binding for global variable ‘wf’
Undefined global functions or variables:
  abline cov.rob density devAskNewPage i rangeGate wf
Consider adding
  importFrom("grDevices", "devAskNewPage")
  importFrom("graphics", "abline")
  importFrom("stats", "density")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'read.flowSet':
read.flowSet
  Code: function(files = NULL, path = ".", pattern = NULL, phenoData,
                 descriptions, name.keyword, alter.names = FALSE,
                 transformation = "linearize", which.lines = NULL,
                 column.pattern = NULL, invert.pattern = FALSE, decades
                 = 0, sep = "\t", as.is = TRUE, name, ncdf = FALSE,
                 dataset = NULL, min.limit = NULL, truncate_max_range =
                 TRUE, emptyValue = TRUE, ignore.text.offset = FALSE,
                 ...)
  Docs: function(files = NULL, path = ".", pattern = NULL, phenoData,
                 descriptions, name.keyword, alter.names = FALSE,
                 transformation = "linearize", which.lines = NULL,
                 column.pattern = NULL, invert.pattern = FALSE, decades
                 = 0, sep = "\t", as.is = TRUE, name, ncdf = FALSE,
                 dataset = NULL, min.limit = NULL, emptyValue = TRUE,
                 ignore.text.offset = FALSE, ...)
  Argument names in code not in docs:
    truncate_max_range
  Mismatches in argument names:
    Position: 19 Code: truncate_max_range Docs: emptyValue
    Position: 20 Code: emptyValue Docs: ignore.text.offset
    Position: 21 Code: ignore.text.offset Docs: ...

* checking Rd \usage sections ... WARNING
Documented arguments not in \usage in documentation object 'read.flowSet':
  ‘truncate_max_range’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 6 NOTEs
See
  ‘/home/biocbuild/bbs-3.6-bioc/meat/flowCore.Rcheck/00check.log’
for details.


flowCore.Rcheck/00install.out:

* installing *source* package ‘flowCore’ ...
** libs
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c FastLogicle.cpp -o FastLogicle.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c Hyperlog.cpp -o Hyperlog.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c Logicle.cpp -o Logicle.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c biexponential.cpp -o biexponential.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c convertRawBytes.cpp -o convertRawBytes.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c fcsTextParse.cpp -o fcsTextParse.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c hyperlogTransform.cpp -o hyperlogTransform.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c inPolygon.cpp -o inPolygon.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c inPolytope.cpp -o inPolytope.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c logicleTransform.cpp -o logicleTransform.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c sortBytes.cpp -o sortBytes.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c uint2double.cpp -o uint2double.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c zeroin.cpp -o zeroin.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/icu.cpp -o boost_regex/icu.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/regex.cpp -o boost_regex/regex.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/instances.cpp -o boost_regex/instances.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/cregex.cpp -o boost_regex/cregex.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/winstances.cpp -o boost_regex/winstances.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I../inst/include/  -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
mkdir -p "/home/biocbuild/bbs-3.6-bioc/meat/flowCore.Rcheck/flowCore/lib"
ar rs "/home/biocbuild/bbs-3.6-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a" boost_regex/cpp_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/usinstances.o boost_regex/icu.o boost_regex/fileiter.o boost_regex/regex.o boost_regex/wide_posix_api.o boost_regex/posix_api.o boost_regex/c_regex_traits.o boost_regex/instances.o boost_regex/w32_regex_traits.o boost_regex/cregex.o boost_regex/regex_traits_defaults.o boost_regex/regex_debug.o boost_regex/static_mutex.o boost_regex/winstances.o boost_regex/regex_raw_buffer.o
ar: creating /home/biocbuild/bbs-3.6-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o convertRawBytes.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o logicleTransform.o pairVectorRcppWrap.o sortBytes.o uint2double.o zeroin.o /home/biocbuild/bbs-3.6-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.6-bioc/meat/flowCore.Rcheck/flowCore/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowCore)

flowCore.Rcheck/flowCore-Ex.timings:

nameusersystemelapsed
EHtrans-class0.0520.0120.065
FCSTransTransform0.9800.1001.082
Subset-methods0.7040.0000.709
actionItem-class0.0000.0000.001
arcsinhTransform0.0840.0000.081
asinht-class0.020.000.02
asinhtGml2-class0.0240.0000.025
biexponentialTransform3.5120.0563.567
boundaryFilter-class0.0520.0000.051
characterOrTransformation-class0.0000.0000.001
coerce0.0360.0040.040
compensateActionItem-class0.0040.0000.001
compensateView-class0.0000.0000.001
compensatedParameter-class0.1880.0000.189
compensation-class0.3400.0000.343
dg1polynomial-class0.0160.0000.017
each_col-methods0.0200.0000.021
ellipsoidGate0.0680.0000.071
exponential-class0.0120.0040.018
expressionFilter-class0.0640.0040.070
fcReference-class0.0000.0000.001
filter-methods0.6440.0400.683
filter-on-methods0.0680.0040.072
filterList-class0.0160.0000.014
filterResult-class0.0000.0000.001
filterResultList-class0.0040.0000.001
filterSummary-class0.0000.0000.001
filterSummaryList-class000
flowFrame-class2.5640.0602.628
flowSet-class1.8560.1001.956
fsApply0.1160.0000.115
gateActionItem-class0.0000.0000.001
gateView-class000
getIndexSort-methods0.0160.0000.017
hyperlog-class1.3160.0001.315
hyperlogtGml2-class0.0200.0000.023
identifier-methods0.0160.0000.017
inverseLogicleTransform0.5240.1040.628
invsplitscale-class0.0200.0000.018
keyword-methods0.5200.0880.610
kmeansFilter0.140.000.14
linearTransform0.0240.0000.026
lintGml2-class0.0200.0000.017
lnTransform0.8880.0080.896
logTransform0.0240.0000.023
logarithm-class0.0160.0000.017
logicalFilterResult-class0.0000.0000.001
logicleTransform0.6920.0080.701
logicletGml2-class0.0360.0000.036
logtGml2-class0.0160.0000.018
manyFilterResult-class0.0040.0000.001
markernames0.5000.0000.499
multipleFilterResult-class0.0000.0000.001
norm2Filter-class0.1240.0000.123
normalizeActionItem-class0.0040.0000.001
normalizeView-class000
parameters-methods0.0200.0000.019
polygonGate0.0360.0000.036
quadGate0.1240.0040.127
quadratic-class0.0160.0000.017
quadraticTransform0.0240.0000.022
ratio-class0.0200.0000.022
ratiotGml2-class0.0200.0000.017
read.FCS0.0320.0000.034
read.FCSheader0.0160.0000.016
read.flowSet0.0640.0000.063
rectangleGate0.0640.0000.067
sampleFilter-class0.0320.0000.029
scaleTransform0.0200.0000.021
singleParameterTransform-class0.0040.0000.001
sinht-class0.0160.0000.018
split-methods0.9440.0160.958
splitScaleTransform0.8720.0160.890
splitscale-class0.0160.0000.018
squareroot-class0.020.000.02
subsettingActionItem-class0.0040.0000.001
subsettingView-class0.0000.0000.001
timeFilter-class1.3920.0201.412
transform-class0.0000.0000.001
transformActionItem-class0.0000.0000.001
transformFilter-class0.1160.0040.120
transformList-class0.6320.0120.645
transformMap-class0.0000.0000.001
transformView-class0.0040.0000.002
truncateTransform0.0320.0040.037
unitytransform-class0.0280.0000.025
view-class0.0000.0000.001
workFlow-class0.0000.0000.002
write.FCS0.1040.0000.105
write.flowSet0.8720.0280.901