BioC 3.6: BUILD BIN report for cydar on veracruz1

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### Running command:
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###   rm -rf cydar.buildbin-libdir && mkdir cydar.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cydar_1.1.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cydar.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cydar.buildbin-libdir cydar_1.1.1.tar.gz'
>>>>>>> 

* installing *source* package ‘cydar’ ...
** libs
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c compute_density.cpp -o compute_density.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c compute_hyperstats.cpp -o compute_hyperstats.o
compute_hyperstats.cpp:84:26: warning: unused variable 'midweight' [-Wunused-variable]
            const double midweight=total_weight/2;
                         ^
1 warning generated.
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c compute_median_int.cpp -o compute_median_int.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c count_cells.cpp -o count_cells.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c drop_redundant.cpp -o drop_redundant.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c find_knn.cpp -o find_knn.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c get_nndist.cpp -o get_nndist.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c init.cpp -o init.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c matrix_info.cpp -o matrix_info.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c objects.cpp -o objects.o
objects.cpp:202:23: warning: unused variable 'centerx' [-Wunused-variable]
        const double* centerx=centers.dptr+nmarkers*center;
                      ^
1 warning generated.
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c pack_indices.cpp -o pack_indices.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2 -c recount.cpp -o recount.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cydar.so compute_density.o compute_hyperstats.o compute_median_int.o count_cells.o drop_redundant.o find_knn.o get_nndist.o init.o matrix_info.o objects.o pack_indices.o recount.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/cydar.buildbin-libdir/cydar/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cydar)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cydar.buildbin-libdir/cydar/libs//cydar.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"
BioC 3.6: BUILD BIN report for cydar on veracruz1

Summary

Command output
