Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U [V] W  X  Y  Z 

BioC 3.6: BUILD BIN report for VanillaICE on veracruz1

This page was generated on 2017-08-16 13:39:52 -0400 (Wed, 16 Aug 2017).

Package 1380/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VanillaICE 1.39.2
Robert Scharpf
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE
Last Changed Rev: 130713 / Revision: 131943
Last Changed Date: 2017-06-27 13:05:27 -0400 (Tue, 27 Jun 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: VanillaICE
Version: 1.39.2
Command: rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.39.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R VanillaICE.buildbin-libdir
StartedAt: 2017-08-16 11:32:08 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 11:32:30 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 22.0 seconds
RetCode: 0
Status:  OK 
PackageFile: VanillaICE_1.39.2.tgz
PackageFileSize: 2.088 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.39.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R VanillaICE.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=VanillaICE.buildbin-libdir VanillaICE_1.39.2.tar.gz'
>>>>>>> 

* installing *source* package ‘VanillaICE’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rinit.c -o rinit.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c viterbi.c -o viterbi.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VanillaICE.so rinit.o viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for ‘distance’ in package ‘VanillaICE’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (VanillaICE)


>>>>>>> 
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"