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BioC 3.6: BUILD report for SVM2CRM on veracruz1

This page was generated on 2017-08-16 13:46:58 -0400 (Wed, 16 Aug 2017).

Package 1318/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SVM2CRM 1.9.0
Guidantonio Malagoli Tagliazucchi
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SVM2CRM
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  ERROR  OK 
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: SVM2CRM
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SVM2CRM
StartedAt: 2017-08-15 21:34:18 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 21:35:26 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 68.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SVM2CRM
###
##############################################################################
##############################################################################


* checking for file ‘SVM2CRM/DESCRIPTION’ ... OK
* preparing ‘SVM2CRM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: LiblineaR
Loading required package: SVM2CRMdata
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb

Attaching package: ‘zoo’

The following objects are masked from ‘package:base’:

    as.Date, as.Date.numeric


Attaching package: ‘pls’

The following object is masked from ‘package:stats’:

    loadings


Error: processing vignette 'SVM2CRM.Rnw' failed with diagnostics:
 chunk 13 
Error in wilcox.test.default(pred[obs == 1], pred[obs == 0], alternative = "great") : 
  not enough (finite) 'x' observations
Execution halted