BioC 3.6: CHECK report for RedeR on veracruz1

Package: RedeR

Version: 1.25.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RedeR_1.25.1.tar.gz

StartedAt: 2017-08-16 07:32:03 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 07:32:41 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 37.9 seconds

RetCode: 0

Status:  OK

CheckDir: RedeR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RedeR_1.25.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/RedeR.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.25.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.6-bioc/meat/RedeR.Rcheck/00check.log’
for details.

* installing *source* package ‘RedeR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RedeR)

name	user	system	elapsed
RedPort-class	0.004	0.000	0.004
RedPort	0.001	0.000	0.000
RedeR.data	0.405	0.018	0.437
addEdgeBetweenContainers	0.010	0.001	0.010
addEdges	0.007	0.000	0.008
addGraph	0.007	0.000	0.008
addLegend	0.010	0.000	0.011
addNodes	0.010	0.001	0.011
addSeries	0.008	0.001	0.011
addSubgraph	0.011	0.001	0.011
addSubgraph.list	0.011	0.001	0.012
att	0.422	0.008	0.433
calld	0.001	0.000	0.001
cea	0.013	0.001	0.014
deSelectEdges	0.008	0.000	0.009
deSelectGraph	0.008	0.001	0.009
deSelectNodes	0.010	0.001	0.011
deleteEdges	0.010	0.001	0.011
deleteNodes	0.010	0.000	0.012
deleteSelectedEdges	0.010	0.000	0.011
deleteSelectedNodes	0.010	0.000	0.011
duplicateGraph	0.010	0.000	0.011
exitd	0.001	0.001	0.002
getContainerComponets	0.010	0.001	0.011
getEdgeIDs	0.011	0.001	0.011
getEdges	0.008	0.000	0.009
getGraph	0.014	0.000	0.015
getNodeIDs	0.007	0.000	0.007
getNodes	0.008	0.001	0.008
getSourceEdgeIDs	0.010	0.001	0.012
getTargetEdgeIDs	0.009	0.000	0.010
gtoy.rm	0	0	0
isDynamicsActive	0.001	0.000	0.001
mergeNodes	0.008	0.001	0.009
mergeOutEdges	0.010	0.001	0.011
nestNodes	0.010	0.000	0.012
nesthc	1.415	0.045	1.487
ping	0.001	0.000	0.001
relax	0.010	0.001	0.011
resetd	0.001	0.000	0.001
selectAllEdges	0.011	0.001	0.012
selectAllNodes	0.011	0.001	0.011
selectEdges	0.011	0.001	0.012
selectGraph	0.008	0.000	0.009
selectNodes	0.007	0.001	0.008
setArrowDirection	0.008	0.000	0.008
subg	0.045	0.005	0.052
updateContainerSize	0.011	0.001	0.012
updateGraph	0.012	0.000	0.017
version	0.002	0.000	0.001