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BioC 3.6: CHECK report for RTNduals on veracruz1

This page was generated on 2017-08-16 13:49:59 -0400 (Wed, 16 Aug 2017).

Package 1181/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTNduals 1.1.3
Vinicius Chagas , Mauro Castro , Clarice Groeneveld
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RTNduals
Last Changed Rev: 129422 / Revision: 131943
Last Changed Date: 2017-05-05 15:30:58 -0400 (Fri, 05 May 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: RTNduals
Version: 1.1.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RTNduals_1.1.3.tar.gz
StartedAt: 2017-08-16 08:07:46 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 08:10:41 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 175.2 seconds
RetCode: 0
Status:  OK 
CheckDir: RTNduals.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RTNduals_1.1.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/RTNduals.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTNduals/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTNduals’ version ‘1.1.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTNduals’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
mbrAssociation-methods 8.335  0.311   8.871
mbrDuals-methods       7.072  0.262   7.526
mbrPlotDuals           6.914  0.327   7.430
mbrDpiFilter-methods   5.740  0.254   6.183
mbrBootstrap-methods   4.960  0.255   5.349
mbrPermutation-methods 4.839  0.179   5.153
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RTNduals.Rcheck/00install.out:

* installing *source* package ‘RTNduals’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RTNduals)

RTNduals.Rcheck/RTNduals-Ex.timings:

nameusersystemelapsed
mbrAssociation-methods8.3350.3118.871
mbrBootstrap-methods4.9600.2555.349
mbrDpiFilter-methods5.7400.2546.183
mbrDuals-methods7.0720.2627.526
mbrGet-methods2.3350.0732.466
mbrPermutation-methods4.8390.1795.153
mbrPlotDuals6.9140.3277.430
mbrPreprocess-methods2.3370.0862.496
tni2mbrPreprocess-methods0.8380.0270.899