BioC 3.6: CHECK report for IWTomics on malbec1

Package: IWTomics

Version: 1.1.3

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings IWTomics_1.1.3.tar.gz

StartedAt: 2017-08-16 00:13:20 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 00:16:27 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 187.8 seconds

RetCode: 0

Status:  OK

CheckDir: IWTomics.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings IWTomics_1.1.3.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/IWTomics.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IWTomics/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IWTomics’ version ‘1.1.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IWTomics’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
IWTomicsTest       48.360  0.144  48.532
IWTomics-package   12.520  0.180  12.703
IWTomicsData-class  9.744  0.012   9.765
plotSummary         5.804  0.028   5.835
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘IWTomics’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for ‘smooth’ in package ‘IWTomics’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IWTomics)

name	user	system	elapsed
ETn_example	0.152	0.004	0.156
IWTomics-package	12.520	0.180	12.703
IWTomicsData-class	9.744	0.012	9.765
IWTomicsTest	48.360	0.144	48.532
features_example	0.004	0.000	0.002
plot-IWTomicsData	0.404	0.004	0.409
plotSummary	5.804	0.028	5.835
plotTest	3.704	0.016	3.725
regionsFeatures_center	0.004	0.000	0.002
regionsFeatures_scale	0.004	0.000	0.003
regions_example	0.000	0.000	0.001
smooth-IWTomicsData	1.256	0.008	1.261