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BioC experimental data: CHECK report for geneLenDataBase on malbec2

This page was generated on 2017-10-18 15:09:31 -0400 (Wed, 18 Oct 2017).

Package 116/314HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.12.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2017-10-18 09:00:07 -0400 (Wed, 18 Oct 2017)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: RELEASE_3_5
Last Commit: 85d6536
Last Changed Date: 2017-08-16 14:52:40 -0400 (Wed, 16 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.12.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.12.0.tar.gz
StartedAt: 2017-10-18 10:47:07 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 10:52:13 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 306.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.080.000.08
anoCar1.genscan.LENGTH0.0520.0160.068
anoCar1.xenoRefGene.LENGTH1.4280.0081.439
anoGam1.ensGene.LENGTH0.0840.0160.098
anoGam1.geneid.LENGTH0.0680.0080.074
anoGam1.genscan.LENGTH0.0520.0120.064
apiMel1.genscan.LENGTH0.0440.0080.053
apiMel2.ensGene.LENGTH0.1120.0200.133
apiMel2.geneid.LENGTH0.0560.0200.076
apiMel2.genscan.LENGTH0.0400.0160.053
aplCal1.xenoRefGene.LENGTH0.6640.0040.670
bosTau2.geneSymbol.LENGTH0.0440.0200.064
bosTau2.geneid.LENGTH0.2640.0000.263
bosTau2.genscan.LENGTH0.1840.0240.209
bosTau2.refGene.LENGTH0.0560.0080.063
bosTau2.sgpGene.LENGTH0.1160.0000.114
bosTau3.ensGene.LENGTH0.1600.0120.174
bosTau3.geneSymbol.LENGTH0.0440.0200.064
bosTau3.geneid.LENGTH0.1200.0080.128
bosTau3.genscan.LENGTH0.0800.0080.087
bosTau3.refGene.LENGTH0.0640.0080.072
bosTau3.sgpGene.LENGTH0.1280.0040.228
bosTau4.ensGene.LENGTH0.1640.0200.185
bosTau4.geneSymbol.LENGTH0.0400.0160.056
bosTau4.genscan.LENGTH0.0760.0040.081
bosTau4.nscanGene.LENGTH0.0240.0240.048
bosTau4.refGene.LENGTH0.0560.0000.057
braFlo1.xenoRefGene.LENGTH0.5280.0000.527
caeJap1.xenoRefGene.LENGTH0.4640.0000.466
caePb1.xenoRefGene.LENGTH0.5920.0000.596
caePb2.xenoRefGene.LENGTH0.5600.0000.559
caeRem2.xenoRefGene.LENGTH0.4840.0000.487
caeRem3.xenoRefGene.LENGTH0.4360.0000.438
calJac1.genscan.LENGTH0.1000.0080.107
calJac1.nscanGene.LENGTH0.1520.0000.152
calJac1.xenoRefGene.LENGTH0.9400.0040.947
canFam1.ensGene.LENGTH0.1440.0000.143
canFam1.geneSymbol.LENGTH0.0040.0040.007
canFam1.genscan.LENGTH0.0680.0000.069
canFam1.nscanGene.LENGTH0.0680.0000.069
canFam1.refGene.LENGTH0.0080.0000.007
canFam1.xenoRefGene.LENGTH0.9280.0040.934
canFam2.ensGene.LENGTH0.1280.0160.146
canFam2.geneSymbol.LENGTH0.0080.0000.007
canFam2.genscan.LENGTH0.0600.0080.068
canFam2.nscanGene.LENGTH0.0640.0080.073
canFam2.refGene.LENGTH0.0080.0000.007
canFam2.xenoRefGene.LENGTH0.9560.0040.962
cavPor3.ensGene.LENGTH0.1160.0000.113
cavPor3.genscan.LENGTH0.1040.0000.105
cavPor3.nscanGene.LENGTH0.6160.0080.621
cavPor3.xenoRefGene.LENGTH0.7720.0000.774
cb1.xenoRefGene.LENGTH0.5280.0000.528
cb3.xenoRefGene.LENGTH0.4280.0000.425
ce2.geneSymbol.LENGTH0.0800.0240.107
ce2.geneid.LENGTH0.0600.0000.061
ce2.refGene.LENGTH0.0800.0280.105
ce4.geneSymbol.LENGTH0.0800.0280.109
ce4.refGene.LENGTH0.0840.0280.112
ce4.xenoRefGene.LENGTH0.1040.0000.104
ce6.ensGene.LENGTH0.0960.0040.099
ce6.geneSymbol.LENGTH0.0880.0200.108
ce6.refGene.LENGTH0.0840.0200.104
ce6.xenoRefGene.LENGTH0.080.000.08
ci1.geneSymbol.LENGTH0.0040.0040.007
ci1.refGene.LENGTH0.0080.0000.007
ci1.xenoRefGene.LENGTH0.1880.0000.188
ci2.ensGene.LENGTH0.0600.0040.063
ci2.geneSymbol.LENGTH0.0000.0040.006
ci2.refGene.LENGTH0.0040.0000.007
ci2.xenoRefGene.LENGTH0.3120.0000.315
danRer3.ensGene.LENGTH0.1920.0120.207
danRer3.geneSymbol.LENGTH0.0840.0040.092
danRer3.refGene.LENGTH0.0560.0160.075
danRer4.ensGene.LENGTH0.1240.0000.123
danRer4.geneSymbol.LENGTH0.0600.0240.084
danRer4.genscan.LENGTH0.0680.0000.068
danRer4.nscanGene.LENGTH0.0920.0200.111
danRer4.refGene.LENGTH0.0640.0120.076
danRer5.ensGene.LENGTH0.1520.0040.156
danRer5.geneSymbol.LENGTH0.0560.0160.074
danRer5.refGene.LENGTH0.0560.0160.073
danRer5.vegaGene.LENGTH0.0560.0200.074
danRer5.vegaPseudoGene.LENGTH0.0040.0000.003
danRer6.ensGene.LENGTH0.1880.0080.195
danRer6.geneSymbol.LENGTH0.0880.0080.096
danRer6.refGene.LENGTH0.0840.0080.091
danRer6.xenoRefGene.LENGTH0.6840.0000.685
dm1.geneSymbol.LENGTH0.0840.0200.103
dm1.genscan.LENGTH0.0280.0120.040
dm1.refGene.LENGTH0.0840.0120.096
dm2.geneSymbol.LENGTH0.0680.0320.099
dm2.geneid.LENGTH0.0480.0160.063
dm2.genscan.LENGTH0.0320.0040.038
dm2.nscanGene.LENGTH0.0560.0000.056
dm2.refGene.LENGTH0.0680.0280.094
dm3.geneSymbol.LENGTH0.0680.0000.068
dm3.nscanPasaGene.LENGTH0.1320.0240.155
dm3.refGene.LENGTH0.0640.0000.065
dp2.genscan.LENGTH0.0400.0080.046
dp2.xenoRefGene.LENGTH0.2480.0000.248
dp3.geneid.LENGTH0.0400.0200.064
dp3.genscan.LENGTH0.0280.0120.040
dp3.xenoRefGene.LENGTH0.1360.0200.158
droAna1.geneid.LENGTH0.1680.0080.176
droAna1.genscan.LENGTH0.0200.0000.022
droAna1.xenoRefGene.LENGTH0.2840.0040.286
droAna2.genscan.LENGTH0.0480.0000.048
droAna2.xenoRefGene.LENGTH0.3040.0080.312
droEre1.genscan.LENGTH0.0280.0120.040
droEre1.xenoRefGene.LENGTH0.4640.0120.477
droGri1.genscan.LENGTH0.0520.0040.056
droGri1.xenoRefGene.LENGTH0.340.000.34
droMoj1.geneid.LENGTH0.1360.0080.145
droMoj1.genscan.LENGTH0.0520.0000.054
droMoj1.xenoRefGene.LENGTH0.2440.0080.254
droMoj2.genscan.LENGTH0.6000.0120.611
droMoj2.xenoRefGene.LENGTH0.3400.0080.349
droPer1.genscan.LENGTH0.0440.0120.058
droPer1.xenoRefGene.LENGTH0.3320.0080.340
droSec1.genscan.LENGTH0.0360.0120.046
droSec1.xenoRefGene.LENGTH0.3360.0000.336
droSim1.geneid.LENGTH0.0480.0120.059
droSim1.genscan.LENGTH0.0200.0120.034
droSim1.xenoRefGene.LENGTH0.2360.0000.236
droVir1.geneid.LENGTH0.0960.0080.103
droVir1.genscan.LENGTH0.0480.0080.057
droVir1.xenoRefGene.LENGTH0.2680.0000.270
droVir2.genscan.LENGTH0.0520.0000.049
droVir2.xenoRefGene.LENGTH0.3600.0040.367
droYak1.geneid.LENGTH0.0520.0120.066
droYak1.genscan.LENGTH0.0320.0120.044
droYak1.xenoRefGene.LENGTH0.2440.0000.243
droYak2.genscan.LENGTH0.0240.0160.041
droYak2.xenoRefGene.LENGTH0.3040.0000.304
equCab1.geneSymbol.LENGTH0.0040.0000.007
equCab1.geneid.LENGTH0.0880.0080.094
equCab1.nscanGene.LENGTH0.0440.0160.061
equCab1.refGene.LENGTH0.0040.0000.007
equCab1.sgpGene.LENGTH0.0640.0080.074
equCab2.ensGene.LENGTH0.1000.0080.108
equCab2.geneSymbol.LENGTH0.0040.0040.010
equCab2.nscanGene.LENGTH0.0520.0280.078
equCab2.refGene.LENGTH0.0080.0000.009
equCab2.xenoRefGene.LENGTH0.7280.0000.727
felCat3.ensGene.LENGTH0.1360.0000.136
felCat3.geneSymbol.LENGTH0.0080.0000.006
felCat3.geneid.LENGTH0.6800.0040.685
felCat3.genscan.LENGTH0.1200.0120.130
felCat3.nscanGene.LENGTH0.6920.0080.699
felCat3.refGene.LENGTH0.0000.0040.005
felCat3.sgpGene.LENGTH0.1320.0000.132
felCat3.xenoRefGene.LENGTH1.1920.0041.198
fr1.ensGene.LENGTH0.0840.0080.091
fr1.genscan.LENGTH0.0600.0000.059
fr2.ensGene.LENGTH0.1400.0200.161
galGal2.ensGene.LENGTH0.0600.0000.059
galGal2.geneSymbol.LENGTH0.0200.0040.024
galGal2.geneid.LENGTH0.0480.0080.058
galGal2.genscan.LENGTH0.1560.0280.184
galGal2.refGene.LENGTH0.0200.0040.023
galGal2.sgpGene.LENGTH0.0640.0240.084
galGal3.ensGene.LENGTH0.0920.0120.104
galGal3.geneSymbol.LENGTH0.0240.0120.035
galGal3.genscan.LENGTH0.0560.0360.093
galGal3.nscanGene.LENGTH0.0840.0000.084
galGal3.refGene.LENGTH0.0200.0040.026
galGal3.xenoRefGene.LENGTH0.5840.0000.586
gasAcu1.ensGene.LENGTH0.0960.0160.116
gasAcu1.nscanGene.LENGTH0.0920.0200.114
hg16.acembly.LENGTH0.4440.0000.443
hg16.ensGene.LENGTH0.0760.0040.077
hg16.exoniphy.LENGTH0.8680.0000.869
hg16.geneSymbol.LENGTH0.0960.0080.103
hg16.geneid.LENGTH0.0600.0040.066
hg16.genscan.LENGTH0.0600.0000.061
hg16.knownGene.LENGTH0.1240.0120.135
hg16.refGene.LENGTH0.1080.0000.108
hg16.sgpGene.LENGTH0.0560.0000.056
hg17.acembly.LENGTH0.4680.0000.467
hg17.acescan.LENGTH0.0160.0000.014
hg17.ccdsGene.LENGTH0.0280.0040.034
hg17.ensGene.LENGTH0.1200.0160.139
hg17.exoniphy.LENGTH0.5200.0000.519
hg17.geneSymbol.LENGTH0.1080.0040.113
hg17.geneid.LENGTH0.0760.0080.088
hg17.genscan.LENGTH0.0680.0000.069
hg17.knownGene.LENGTH0.1200.0080.129
hg17.refGene.LENGTH0.0920.0000.095
hg17.sgpGene.LENGTH0.0720.0120.081
hg17.vegaGene.LENGTH0.0440.0080.055
hg17.vegaPseudoGene.LENGTH0.0120.0080.023
hg17.xenoRefGene.LENGTH0.2160.0000.215
hg18.acembly.LENGTH0.6840.0040.687
hg18.acescan.LENGTH0.0160.0000.014
hg18.ccdsGene.LENGTH0.0480.0000.049
hg18.ensGene.LENGTH0.2520.0120.262
hg18.exoniphy.LENGTH0.7840.0000.784
hg18.geneSymbol.LENGTH0.1200.0040.125
hg18.geneid.LENGTH0.0880.0000.090
hg18.genscan.LENGTH0.0640.0040.068
hg18.knownGene.LENGTH0.1560.0080.162
hg18.knownGeneOld3.LENGTH0.6600.0080.668
hg18.refGene.LENGTH0.0880.0080.097
hg18.sgpGene.LENGTH0.0720.0120.087
hg18.sibGene.LENGTH0.3400.0000.343
hg18.xenoRefGene.LENGTH0.4040.0120.415
hg19.ccdsGene.LENGTH0.0480.0120.057
hg19.ensGene.LENGTH0.3360.0120.348
hg19.exoniphy.LENGTH0.5360.0000.535
hg19.geneSymbol.LENGTH0.1120.0040.116
hg19.knownGene.LENGTH0.1920.0120.204
hg19.nscanGene.LENGTH0.1480.0000.148
hg19.refGene.LENGTH0.1040.0080.112
hg19.xenoRefGene.LENGTH0.4400.0000.443
loxAfr3.xenoRefGene.LENGTH1.1120.0001.116
mm7.ensGene.LENGTH0.1320.0000.133
mm7.geneSymbol.LENGTH0.0880.0000.089
mm7.geneid.LENGTH0.0880.0080.095
mm7.genscan.LENGTH0.0720.0000.072
mm7.knownGene.LENGTH0.1080.0000.107
mm7.refGene.LENGTH0.1000.0120.112
mm7.sgpGene.LENGTH0.1000.0160.115
mm7.xenoRefGene.LENGTH0.4320.0000.433
mm8.ccdsGene.LENGTH0.0280.0040.031
mm8.ensGene.LENGTH0.0840.0000.085
mm8.geneSymbol.LENGTH0.0880.0000.088
mm8.geneid.LENGTH0.0840.0120.096
mm8.genscan.LENGTH0.2160.0040.221
mm8.knownGene.LENGTH0.1040.0040.106
mm8.nscanGene.LENGTH0.0680.0000.068
mm8.refGene.LENGTH0.0920.0000.094
mm8.sgpGene.LENGTH0.0880.0040.095
mm8.sibGene.LENGTH0.2600.0000.261
mm8.xenoRefGene.LENGTH0.9680.0200.987
mm9.acembly.LENGTH0.3160.0000.317
mm9.ccdsGene.LENGTH0.0280.0160.042
mm9.ensGene.LENGTH0.1920.0160.209
mm9.exoniphy.LENGTH0.4320.0000.434
mm9.geneSymbol.LENGTH0.0880.0000.089
mm9.geneid.LENGTH0.0840.0160.100
mm9.genscan.LENGTH0.1840.0000.183
mm9.knownGene.LENGTH0.1160.0120.129
mm9.nscanGene.LENGTH0.0600.0000.061
mm9.refGene.LENGTH0.0840.0040.088
mm9.sgpGene.LENGTH0.0840.0120.094
mm9.xenoRefGene.LENGTH0.4600.0000.459
monDom1.genscan.LENGTH0.0560.0160.071
monDom4.ensGene.LENGTH0.0840.0040.088
monDom4.geneSymbol.LENGTH0.0040.0000.004
monDom4.genscan.LENGTH0.0640.0160.078
monDom4.nscanGene.LENGTH0.2040.0280.234
monDom4.refGene.LENGTH0.0080.0000.005
monDom4.xenoRefGene.LENGTH0.4280.0000.427
monDom5.ensGene.LENGTH0.1080.0040.114
monDom5.geneSymbol.LENGTH0.0040.0000.004
monDom5.genscan.LENGTH0.0480.0000.049
monDom5.nscanGene.LENGTH0.1000.0000.102
monDom5.refGene.LENGTH0.0040.0000.004
monDom5.xenoRefGene.LENGTH1.2120.0001.212
ornAna1.ensGene.LENGTH0.1040.0240.128
ornAna1.geneSymbol.LENGTH0.0040.0000.004
ornAna1.refGene.LENGTH0.0040.0000.002
ornAna1.xenoRefGene.LENGTH0.5520.0000.553
oryLat2.ensGene.LENGTH0.0800.0120.092
oryLat2.geneSymbol.LENGTH0.0040.0000.005
oryLat2.refGene.LENGTH0.0040.0000.005
oryLat2.xenoRefGene.LENGTH0.5000.0040.504
panTro1.ensGene.LENGTH0.1040.0000.104
panTro1.geneid.LENGTH0.0600.0080.071
panTro1.genscan.LENGTH0.0560.0040.059
panTro1.xenoRefGene.LENGTH0.1320.0120.144
panTro2.ensGene.LENGTH0.20.00.2
panTro2.geneSymbol.LENGTH0.1320.0000.132
panTro2.genscan.LENGTH0.060.000.06
panTro2.nscanGene.LENGTH0.0640.0000.064
panTro2.refGene.LENGTH0.1240.0040.128
panTro2.xenoRefGene.LENGTH0.6240.0000.623
petMar1.xenoRefGene.LENGTH0.3440.0160.358
ponAbe2.ensGene.LENGTH0.1000.0040.105
ponAbe2.geneSymbol.LENGTH0.0120.0080.019
ponAbe2.genscan.LENGTH0.1240.0000.124
ponAbe2.nscanGene.LENGTH0.0640.0000.065
ponAbe2.refGene.LENGTH0.0080.0080.018
ponAbe2.xenoRefGene.LENGTH0.8120.0000.812
priPac1.xenoRefGene.LENGTH0.4920.0040.495
rheMac2.ensGene.LENGTH0.7160.0120.726
rheMac2.geneSymbol.LENGTH0.0000.0040.006
rheMac2.geneid.LENGTH0.0600.0120.072
rheMac2.nscanGene.LENGTH0.0600.0000.058
rheMac2.refGene.LENGTH0.0000.0040.006
rheMac2.sgpGene.LENGTH0.0760.0040.080
rheMac2.xenoRefGene.LENGTH0.6280.0000.629
rn3.ensGene.LENGTH0.1160.0120.129
rn3.geneSymbol.LENGTH0.0640.0200.082
rn3.geneid.LENGTH0.0520.0000.052
rn3.genscan.LENGTH0.0640.0040.068
rn3.knownGene.LENGTH0.0320.0040.035
rn3.nscanGene.LENGTH0.0560.0000.059
rn3.refGene.LENGTH0.0680.0080.078
rn3.sgpGene.LENGTH0.0600.0000.059
rn3.xenoRefGene.LENGTH0.6680.0040.672
rn4.ensGene.LENGTH0.2760.0080.282
rn4.geneSymbol.LENGTH0.0680.0080.076
rn4.geneid.LENGTH0.0960.0120.111
rn4.genscan.LENGTH0.0640.0040.069
rn4.knownGene.LENGTH0.0320.0040.038
rn4.nscanGene.LENGTH0.0520.0320.087
rn4.refGene.LENGTH0.0560.0160.074
rn4.sgpGene.LENGTH0.0880.0080.094
rn4.xenoRefGene.LENGTH0.3720.0040.376
sacCer1.ensGene.LENGTH0.0240.0040.029
sacCer2.ensGene.LENGTH0.0160.0080.027
strPur1.geneSymbol.LENGTH0.0040.0000.006
strPur1.genscan.LENGTH0.0640.0000.064
strPur1.refGene.LENGTH0.0040.0040.005
strPur1.xenoRefGene.LENGTH0.5600.0040.566
strPur2.geneSymbol.LENGTH0.0040.0000.005
strPur2.genscan.LENGTH0.1000.0000.101
strPur2.refGene.LENGTH0.0080.0000.005
strPur2.xenoRefGene.LENGTH0.7240.0040.728
supportedGeneIDs0.6440.0044.009
supportedGenomes0.1720.0080.665
taeGut1.ensGene.LENGTH0.0720.0080.078
taeGut1.geneSymbol.LENGTH0.0000.0040.003
taeGut1.genscan.LENGTH0.0440.0120.055
taeGut1.nscanGene.LENGTH0.0280.0160.043
taeGut1.refGene.LENGTH0.0040.0000.003
taeGut1.xenoRefGene.LENGTH0.5840.0040.589
tetNig1.ensGene.LENGTH0.1040.0080.112
tetNig1.geneid.LENGTH0.1640.0000.162
tetNig1.genscan.LENGTH0.0720.0080.082
tetNig1.nscanGene.LENGTH0.0840.0040.085
tetNig2.ensGene.LENGTH0.0800.0080.090
unfactor0.0040.0000.005
xenTro1.genscan.LENGTH0.0960.0000.095
xenTro2.ensGene.LENGTH0.1360.0000.135
xenTro2.geneSymbol.LENGTH0.0480.0080.056
xenTro2.genscan.LENGTH0.0800.0160.096
xenTro2.refGene.LENGTH0.0400.0120.049