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BioC 3.5: CHECK report for trackViewer on veracruz2

This page was generated on 2017-10-18 14:31:44 -0400 (Wed, 18 Oct 2017).

Package 1326/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trackViewer 1.12.0
Jianhong Ou
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/trackViewer
Branch: RELEASE_3_5
Last Commit: 13e0968
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: trackViewer
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings trackViewer_1.12.0.tar.gz
StartedAt: 2017-10-18 09:48:23 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 09:54:34 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 370.6 seconds
RetCode: 0
Status:  OK 
CheckDir: trackViewer.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings trackViewer_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/trackViewer.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘trackViewer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘trackViewer’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘trackViewer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
trackViewer-package 19.741  0.221  20.547
parseWIG            10.810  0.066  11.255
viewTracks          10.391  0.070  10.819
geneModelFromTxdb    9.876  0.316  10.583
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

trackViewer.Rcheck/00install.out:

* installing *source* package ‘trackViewer’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (trackViewer)

trackViewer.Rcheck/trackViewer-Ex.timings:

nameusersystemelapsed
GRoperator2.0060.0422.102
addArrowMark0.0120.0010.013
addGuideLine0.0070.0000.008
coverageGR0.3790.0060.392
dandelion.plot1.7410.0171.818
geneModelFromTxdb 9.876 0.31610.583
getCurTrackViewport0.0560.0010.058
ideogramPlot0.0010.0000.002
importBam0.5550.0060.572
importData2.1590.0262.233
importScore0.9650.0161.014
loadIdeogram0.0010.0000.001
lolliplot1.2090.0111.249
optimizeStyle0.9180.0280.982
parse2GRanges0.0090.0000.010
parseWIG10.810 0.06611.255
plotGRanges1.6410.0111.694
track0.0460.0010.047
trackViewer-package19.741 0.22120.547
trackViewerStyle0.0010.0000.001
viewTracks10.391 0.07010.819