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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data systemPipeR
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* checking for file ‘systemPipeR/DESCRIPTION’ ... OK
* preparing ‘systemPipeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
Warning: ‘inst/doc’ files
‘systemPipeRIBOseq.R’, ‘systemPipeRNAseq.R’
ignored as vignettes have been rebuilt.
Run R CMD build with --no-build-vignettes to prevent rebuilding.
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘systemPipeR_1.10.0.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_cluster_0f051c2b1f70364c102c25e53a23f12e.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_cluster_0f051c2b1f70364c102c25e53a23f12e.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_cluster_0f051c2b1f70364c102c25e53a23f12e.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_e41a74f26d017f5fc177af2655e45d55.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_e41a74f26d017f5fc177af2655e45d55.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_e41a74f26d017f5fc177af2655e45d55.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/construct_sysargs_a8854172136869af90c5343d9951536e.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/custom_preprocessing_e41edaa3ba2719fdfc02ff89b468a9e1.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/custom_preprocessing_e41edaa3ba2719fdfc02ff89b468a9e1.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/custom_preprocessing_e41edaa3ba2719fdfc02ff89b468a9e1.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/deseq2_deg_counts_89654aad3b028aaa60cf3b27b7166c34.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_cluster_981fb1c217635fd948ed528cf5d9f37c.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_cluster_981fb1c217635fd948ed528cf5d9f37c.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_cluster_981fb1c217635fd948ed528cf5d9f37c.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_single_87e6e7dcfdfbf7bc314100638c26c52d.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_single_87e6e7dcfdfbf7bc314100638c26c52d.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_single_87e6e7dcfdfbf7bc314100638c26c52d.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genChip_workflow_single_6eee2576b65a48f51e1dd54432ac8ea0.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genChip_workflow_single_6eee2576b65a48f51e1dd54432ac8ea0.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genChip_workflow_single_6eee2576b65a48f51e1dd54432ac8ea0.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genRibo_workflow_single_a7ee40491d0f82a7209ce7f20aa1bce9.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genRibo_workflow_single_a7ee40491d0f82a7209ce7f20aa1bce9.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genRibo_workflow_single_a7ee40491d0f82a7209ce7f20aa1bce9.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_single_865fbdca4c56e8ae4f6295e250ab220b.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_single_865fbdca4c56e8ae4f6295e250ab220b.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_single_865fbdca4c56e8ae4f6295e250ab220b.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genVar_workflow_single_85369033487573758c368e1b18c2e939.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genVar_workflow_single_85369033487573758c368e1b18c2e939.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/genVar_workflow_single_85369033487573758c368e1b18c2e939.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/hierarchical_clustering_26f264bb871fd0c2f342b0c079aee49e.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/hierarchical_clustering_26f264bb871fd0c2f342b0c079aee49e.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/hierarchical_clustering_26f264bb871fd0c2f342b0c079aee49e.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/plot_go_enrichment_a4a220bf9eb7f1125e3a802cedd67c24.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/process_monitoring_0e49b11e73810c66c83bdcd6bcd3e394.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/read_counting_mirna_4195067fd0942be85d1decde3da75c3e.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/read_counting_mirna_4195067fd0942be85d1decde3da75c3e.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/read_counting_mirna_4195067fd0942be85d1decde3da75c3e.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multicore_8f4bae011588aec1419eb6f86f683f9b.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multicore_8f4bae011588aec1419eb6f86f683f9b.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multicore_8f4bae011588aec1419eb6f86f683f9b.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multinode_83ec3b9d8967b28eed8957801d322dda.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multinode_83ec3b9d8967b28eed8957801d322dda.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multinode_83ec3b9d8967b28eed8957801d322dda.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/run_bowtie_parallel_5bfc0855d4e02f149c5d7aedcfa6ac7b.RData’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/run_bowtie_parallel_5bfc0855d4e02f149c5d7aedcfa6ac7b.rdb’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/run_bowtie_parallel_5bfc0855d4e02f149c5d7aedcfa6ac7b.rdx’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
‘systemPipeR/vignettes/systemPipeR_cache/html/run_bowtie_single_c498a76143c61cef609d9c01a7de3243.RData’
