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BioC 3.5: CHECK report for ssviz on tokay2

This page was generated on 2017-10-18 14:23:37 -0400 (Wed, 18 Oct 2017).

Package 1273/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ssviz 1.10.0
Diana Low
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/ssviz
Branch: RELEASE_3_5
Last Commit: 836806a
Last Changed Date: 2017-05-02 23:49:15 -0400 (Tue, 02 May 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ssviz
Version: 1.10.0
Command: rm -rf ssviz.buildbin-libdir ssviz.Rcheck && mkdir ssviz.buildbin-libdir ssviz.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ssviz.buildbin-libdir ssviz_1.10.0.tar.gz >ssviz.Rcheck\00install.out 2>&1 && cp ssviz.Rcheck\00install.out ssviz-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=ssviz.buildbin-libdir --install="check:ssviz-install.out" --force-multiarch --no-vignettes --timings ssviz_1.10.0.tar.gz
StartedAt: 2017-10-18 03:14:50 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 03:18:28 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 218.7 seconds
RetCode: 0
Status:  OK  
CheckDir: ssviz.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ssviz.buildbin-libdir ssviz.Rcheck && mkdir ssviz.buildbin-libdir ssviz.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ssviz.buildbin-libdir ssviz_1.10.0.tar.gz >ssviz.Rcheck\00install.out 2>&1 && cp ssviz.Rcheck\00install.out ssviz-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=ssviz.buildbin-libdir --install="check:ssviz-install.out" --force-multiarch --no-vignettes --timings ssviz_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/ssviz.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ssviz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ssviz' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ssviz' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
plotPP   11.58   0.04   11.62
pingpong 11.59   0.00   11.59
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
pingpong 16.36      0   16.36
plotPP   15.85      0   15.85
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/ssviz.Rcheck/00check.log'
for details.


ssviz.Rcheck/00install.out:


install for i386

* installing *source* package 'ssviz' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ssviz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ssviz' as ssviz_1.10.0.zip
* DONE (ssviz)

ssviz.Rcheck/examples_i386/ssviz-Ex.timings:

nameusersystemelapsed
getCountMatrix0.570.010.58
logicalORmissing-class000
ntfreq0.440.020.45
pingpong11.59 0.0011.59
plotDistro1.460.001.46
plotFreq1.600.011.62
plotPP11.58 0.0411.62
plotRegion1.250.001.25
readBam0.350.010.36

ssviz.Rcheck/examples_x64/ssviz-Ex.timings:

nameusersystemelapsed
getCountMatrix0.360.020.37
logicalORmissing-class000
ntfreq0.860.000.86
pingpong16.36 0.0016.36
plotDistro2.160.052.20
plotFreq1.860.011.88
plotPP15.85 0.0015.85
plotRegion1.490.001.49
readBam0.370.000.37