BioC 3.5: CHECK report for scran on tokay2

Package: scran

Version: 1.4.5

Command: rm -rf scran.buildbin-libdir scran.Rcheck && mkdir scran.buildbin-libdir scran.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=scran.buildbin-libdir scran_1.4.5.tar.gz >scran.Rcheck\00install.out 2>&1 && cp scran.Rcheck\00install.out scran-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=scran.buildbin-libdir --install="check:scran-install.out" --force-multiarch --no-vignettes --timings scran_1.4.5.tar.gz

StartedAt: 2017-10-18 02:52:50 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 03:01:34 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 523.9 seconds

RetCode: 0

Status:  OK

CheckDir: scran.Rcheck

Warnings: 0

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###
### Running command:
###
###   rm -rf scran.buildbin-libdir scran.Rcheck && mkdir scran.buildbin-libdir scran.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=scran.buildbin-libdir scran_1.4.5.tar.gz >scran.Rcheck\00install.out 2>&1 && cp scran.Rcheck\00install.out scran-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=scran.buildbin-libdir --install="check:scran-install.out" --force-multiarch --no-vignettes --timings scran_1.4.5.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/scran.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'scran/DESCRIPTION' ... OK
* this is package 'scran' version '1.4.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'scran' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.5-bioc/meat/scran.buildbin-libdir/scran/libs/i386/scran.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
The detected symbols are linked into the code but might come from
libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
combineVar 5.97   0.14    6.14
convertTo  5.48   0.25    5.73
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/scran.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'scran' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c build_snn.cpp -o build_snn.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c compute_CV2.cpp -o compute_CV2.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c compute_cordist.cpp -o compute_cordist.o
compute_cordist.cpp: In instantiation of 'SEXPREC* cordist_internal(const T*, const matrix_info&, SEXP, SEXP) [with T = int; SEXP = SEXPREC*]':
compute_cordist.cpp:142:73:   required from here
compute_cordist.cpp:119:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 for (size_t s=0; s<slen; ++s) {
                                   ^
compute_cordist.cpp: In instantiation of 'SEXPREC* cordist_internal(const T*, const matrix_info&, SEXP, SEXP) [with T = double; SEXP = SEXPREC*]':
compute_cordist.cpp:144:76:   required from here
compute_cordist.cpp:119:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
compute_cordist.cpp: In instantiation of 'void average_ranks(const T*, const matrix_info&, const int*, int, double*) [with T = int]':
compute_cordist.cpp:79:58:   required from 'SEXPREC* cordist_internal(const T*, const matrix_info&, SEXP, SEXP) [with T = int; SEXP = SEXPREC*]'
compute_cordist.cpp:142:73:   required from here
compute_cordist.cpp:12:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp:25:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp:29:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (s==subset_len-1 || collected[s].first!=collected[s+1].first) {
                  ^
compute_cordist.cpp:50:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp: In instantiation of 'void average_ranks(const T*, const matrix_info&, const int*, int, double*) [with T = double]':
compute_cordist.cpp:79:58:   required from 'SEXPREC* cordist_internal(const T*, const matrix_info&, SEXP, SEXP) [with T = double; SEXP = SEXPREC*]'
compute_cordist.cpp:144:76:   required from here
compute_cordist.cpp:12:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp:25:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp:29:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (s==subset_len-1 || collected[s].first!=collected[s+1].first) {
                  ^
compute_cordist.cpp:50:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c compute_rho.cpp -o compute_rho.o
compute_rho.cpp: In function 'SEXPREC* combine_corP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
compute_rho.cpp:421:31: warning: unused variable 'temp_abs_rho' [-Wunused-variable]
         double temp_combined, temp_abs_rho;
                               ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c estimate_variance.cpp -o estimate_variance.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c forge_system.cpp -o forge_system.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c matrix_info.cpp -o matrix_info.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c overlap_exprs.cpp -o overlap_exprs.o
overlap_exprs.cpp: In instantiation of 'SEXPREC* overlap_exprs_internal(const T*, const matrix_info&, SEXP, SEXP, T) [with T = int; SEXP = SEXPREC*]':
overlap_exprs.cpp:138:96:   required from here
overlap_exprs.cpp:26:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (cursource[j]<1 || cursource[j]>ncells) { 
                                               ^
overlap_exprs.cpp: In instantiation of 'SEXPREC* overlap_exprs_internal(const T*, const matrix_info&, SEXP, SEXP, T) [with T = double; SEXP = SEXPREC*]':
overlap_exprs.cpp:140:96:   required from here
overlap_exprs.cpp:26:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c run_dormqr.cpp -o run_dormqr.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c shuffle_scores.cpp -o shuffle_scores.o
shuffle_scores.cpp: In instantiation of 'SEXPREC* shuffle_scores_internal(SEXP, const T*, const matrix_info&, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP) [with T = int; SEXP = SEXPREC*]':
shuffle_scores.cpp:104:120:   required from here
shuffle_scores.cpp:24:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (start < 0 || last > emat.ncol) { throw std::runtime_error("cell indices are out of range"); }
                           ^
shuffle_scores.cpp: In instantiation of 'SEXPREC* shuffle_scores_internal(SEXP, const T*, const matrix_info&, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP) [with T = double; SEXP = SEXPREC*]':
shuffle_scores.cpp:106:123:   required from here
shuffle_scores.cpp:24:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o scran.dll tmp.def build_snn.o compute_CV2.o compute_cordist.o compute_rho.o estimate_variance.o forge_system.o init.o matrix_info.o overlap_exprs.o run_dormqr.o shuffle_scores.o -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/scran.buildbin-libdir/scran/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'scran' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c build_snn.cpp -o build_snn.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c compute_CV2.cpp -o compute_CV2.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c compute_cordist.cpp -o compute_cordist.o
compute_cordist.cpp: In instantiation of 'SEXPREC* cordist_internal(const T*, const matrix_info&, SEXP, SEXP) [with T = int; SEXP = SEXPREC*]':
compute_cordist.cpp:142:73:   required from here
compute_cordist.cpp:119:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 for (size_t s=0; s<slen; ++s) {
                                   ^
compute_cordist.cpp: In instantiation of 'SEXPREC* cordist_internal(const T*, const matrix_info&, SEXP, SEXP) [with T = double; SEXP = SEXPREC*]':
compute_cordist.cpp:144:76:   required from here
compute_cordist.cpp:119:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
compute_cordist.cpp: In instantiation of 'void average_ranks(const T*, const matrix_info&, const int*, int, double*) [with T = int]':
compute_cordist.cpp:79:58:   required from 'SEXPREC* cordist_internal(const T*, const matrix_info&, SEXP, SEXP) [with T = int; SEXP = SEXPREC*]'
compute_cordist.cpp:142:73:   required from here
compute_cordist.cpp:12:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp:25:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp:29:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (s==subset_len-1 || collected[s].first!=collected[s+1].first) {
                  ^
compute_cordist.cpp:50:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp: In instantiation of 'void average_ranks(const T*, const matrix_info&, const int*, int, double*) [with T = double]':
compute_cordist.cpp:79:58:   required from 'SEXPREC* cordist_internal(const T*, const matrix_info&, SEXP, SEXP) [with T = double; SEXP = SEXPREC*]'
compute_cordist.cpp:144:76:   required from here
compute_cordist.cpp:12:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp:25:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
compute_cordist.cpp:29:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (s==subset_len-1 || collected[s].first!=collected[s+1].first) {
                  ^
compute_cordist.cpp:50:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (s=0; s<subset_len; ++s) {
                    ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c compute_rho.cpp -o compute_rho.o
compute_rho.cpp: In function 'SEXPREC* combine_corP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
compute_rho.cpp:421:31: warning: unused variable 'temp_abs_rho' [-Wunused-variable]
         double temp_combined, temp_abs_rho;
                               ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c estimate_variance.cpp -o estimate_variance.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c forge_system.cpp -o forge_system.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c matrix_info.cpp -o matrix_info.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c overlap_exprs.cpp -o overlap_exprs.o
overlap_exprs.cpp: In instantiation of 'SEXPREC* overlap_exprs_internal(const T*, const matrix_info&, SEXP, SEXP, T) [with T = int; SEXP = SEXPREC*]':
overlap_exprs.cpp:138:96:   required from here
overlap_exprs.cpp:26:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (cursource[j]<1 || cursource[j]>ncells) { 
                                               ^
overlap_exprs.cpp: In instantiation of 'SEXPREC* overlap_exprs_internal(const T*, const matrix_info&, SEXP, SEXP, T) [with T = double; SEXP = SEXPREC*]':
overlap_exprs.cpp:140:96:   required from here
overlap_exprs.cpp:26:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c run_dormqr.cpp -o run_dormqr.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c shuffle_scores.cpp -o shuffle_scores.o
shuffle_scores.cpp: In instantiation of 'SEXPREC* shuffle_scores_internal(SEXP, const T*, const matrix_info&, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP) [with T = int; SEXP = SEXPREC*]':
shuffle_scores.cpp:104:120:   required from here
shuffle_scores.cpp:24:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (start < 0 || last > emat.ncol) { throw std::runtime_error("cell indices are out of range"); }
                           ^
shuffle_scores.cpp: In instantiation of 'SEXPREC* shuffle_scores_internal(SEXP, const T*, const matrix_info&, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP) [with T = double; SEXP = SEXPREC*]':
shuffle_scores.cpp:106:123:   required from here
shuffle_scores.cpp:24:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o scran.dll tmp.def build_snn.o compute_CV2.o compute_cordist.o compute_rho.o estimate_variance.o forge_system.o init.o matrix_info.o overlap_exprs.o run_dormqr.o shuffle_scores.o -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/scran.buildbin-libdir/scran/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scran' as scran_1.4.5.zip
* DONE (scran)

name	user	system	elapsed
DM	0.14	0.02	0.16
buildSNNGraph	0.11	0.01	0.12
combineVar	5.97	0.14	6.14
computeSpikeFactors	1.84	0.00	1.84
computeSumFactors	2.61	0.06	2.71
convertTo	5.48	0.25	5.73
correlatePairs	0.50	0.02	0.51
cyclone	0.62	0.02	0.64
decomposeVar	3.32	0.09	3.42
denoisePCA	0.31	0.01	0.33
exploreData	0.76	0.04	0.92
findMarkers	2.67	0.12	2.80
improvedCV2	1.11	0.08	1.18
mnnCorrect	0.13	0.00	0.13
overlapExprs	1.42	0.03	1.45
quickCluster	1.05	0.00	1.05
sandbag	0.14	0.00	0.14
selectorPlot	0.57	0.00	0.58
spikes	1.00	0.02	1.01
technicalCV2	2.16	0.04	2.20
testVar	0.04	0.00	0.05
trendVar	2.32	0.03	2.34

name	user	system	elapsed
DM	0.14	0.00	0.14
buildSNNGraph	0.11	0.01	0.37
combineVar	4.76	0.02	4.87
computeSpikeFactors	1.35	0.01	1.36
computeSumFactors	1.81	0.04	1.84
convertTo	4.86	0.14	5.00
correlatePairs	0.16	0.00	0.16
cyclone	0.29	0.02	0.31
decomposeVar	2.17	0.04	2.22
denoisePCA	0.14	0.00	0.14
exploreData	0.63	0.05	0.67
findMarkers	1.95	0.02	1.97
improvedCV2	0.94	0.03	0.97
mnnCorrect	0.08	0.00	0.07
overlapExprs	1.00	0.03	1.03
quickCluster	0.49	0.03	0.52
sandbag	0.11	0.00	0.11
selectorPlot	0.51	0.02	0.53
spikes	1.28	0.01	1.29
technicalCV2	1.13	0.02	1.15
testVar	0.06	0.00	0.06
trendVar	2.22	0.03	2.25