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BioC 3.5: CHECK report for regsplice on malbec2

This page was generated on 2017-10-18 14:18:12 -0400 (Wed, 18 Oct 2017).

Package 1097/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
regsplice 1.2.0
Lukas M. Weber
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/regsplice
Branch: RELEASE_3_5
Last Commit: 6a67016
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: regsplice
Version: 1.2.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings regsplice_1.2.0.tar.gz
StartedAt: 2017-10-18 01:57:22 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 02:00:32 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 190.2 seconds
RetCode: 0
Status:  OK 
CheckDir: regsplice.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings regsplice_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/regsplice.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘regsplice/DESCRIPTION’ ... OK
* this is package ‘regsplice’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘regsplice’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
fitRegMultiple 12.660  0.012  12.689
LRTests        12.556  0.044  12.609
summaryTable   10.556  0.008  10.571
regsplice      10.196  0.008  10.213
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

regsplice.Rcheck/00install.out:

* installing *source* package ‘regsplice’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (regsplice)

regsplice.Rcheck/regsplice-Ex.timings:

nameusersystemelapsed
LRTests12.556 0.04412.609
RegspliceData0.3200.0080.328
RegspliceResults0.0040.0000.002
createDesignMatrix0.0000.0000.002
filterLowCounts0.0760.0000.078
filterZeros0.0440.0000.045
fitRegMultiple12.660 0.01212.689
initializeResults0.10.00.1
regsplice10.196 0.00810.213
runNormalization0.0720.0000.070
runVoom0.0960.0000.095
summaryTable10.556 0.00810.571