Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P [Q] R  S  T  U  V  W  X  Y  Z 

BioC 3.5: INSTALL report for qpgraph on tokay2

This page was generated on 2017-10-18 14:20:18 -0400 (Wed, 18 Oct 2017).

Package 1038/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qpgraph 2.10.2
Robert Castelo
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/qpgraph
Branch: RELEASE_3_5
Last Commit: 3bb032b
Last Changed Date: 2017-09-01 07:25:20 -0400 (Fri, 01 Sep 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: qpgraph
Version: 2.10.2
Command: rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/qpgraph_2.10.2.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=qpgraph.buildbin-libdir --merge-multiarch qpgraph_2.10.2.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL qpgraph_2.10.2.zip && rm qpgraph_2.10.2.tar.gz qpgraph_2.10.2.zip
StartedAt: 2017-10-17 18:36:50 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:38:12 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 81.7 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/qpgraph_2.10.2.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=qpgraph.buildbin-libdir --merge-multiarch qpgraph_2.10.2.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL qpgraph_2.10.2.zip  && rm qpgraph_2.10.2.tar.gz qpgraph_2.10.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1853k  100 1853k    0     0  60.2M      0 --:--:-- --:--:-- --:--:-- 62.4M

install for i386

* installing *source* package 'qpgraph' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c cliquer.c -o cliquer.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c graph.c -o graph.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_fast_path_weight':
qpgraph.c:5849:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
     int i = edges[k, 0];
                    ^
qpgraph.c:5850:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
     int j = edges[k, 1];
                    ^
qpgraph.c: In function 'ssd_A':
qpgraph.c:8157:17: warning: unused variable 'm' [-Wunused-variable]
   int     i,j,k,m;
                 ^
qpgraph.c:8157:15: warning: unused variable 'k' [-Wunused-variable]
   int     i,j,k,m;
               ^
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:8286:5: warning: assignment from incompatible pointer type
   G = LOGICAL(GR);
     ^
In file included from qpgraph.c:27:0:
qpgraph.c: In function 'qp_fast_edge_nrr':
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rmath.h:302:13: warning: 'Rf_df' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define pt  Rf_pt
             ^
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rmath.h:236:13: note: 'Rf_df' was declared here
 #define df  Rf_df
             ^
qpgraph.c:5082:16: note: in expansion of macro 'df'
   int    k, l, df, n_upper_tri;
                ^
qpgraph.c:5454:11: warning: 'pcorR' may be used uninitialized in this function [-Wmaybe-uninitialized]
   SEXP    pcorR;
           ^
qpgraph.c: In function 'qp_fast_ci_test_hmgm':
qpgraph.c:3976:36: warning: 'rss1' may be used uninitialized in this function [-Wmaybe-uninitialized]
       *partial_eta_squared = (rss1 - rss2) / rss0;
                                    ^
qpgraph.c:3703:11: note: 'rss1' was declared here
   double  rss1, rss2;
           ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c reorder.c -o reorder.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lRblas -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'det' from package 'Matrix' in package 'qpgraph'
** help
*** installing help indices
** building package indices
** installing vignettes
   'eQTLnetworks.Rnw' 
   'qpTxRegNet.Rnw' 
   'qpgraphSimulate.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'qpgraph' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c cliquer.c -o cliquer.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c graph.c -o graph.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_fast_path_weight':
qpgraph.c:5849:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
     int i = edges[k, 0];
                    ^
qpgraph.c:5850:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
     int j = edges[k, 1];
                    ^
qpgraph.c: In function 'ssd_A':
qpgraph.c:8157:17: warning: unused variable 'm' [-Wunused-variable]
   int     i,j,k,m;
                 ^
qpgraph.c:8157:15: warning: unused variable 'k' [-Wunused-variable]
   int     i,j,k,m;
               ^
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:8286:5: warning: assignment from incompatible pointer type
   G = LOGICAL(GR);
     ^
In file included from qpgraph.c:27:0:
qpgraph.c: In function 'qp_edge_nrr':
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rmath.h:302:13: warning: 'Rf_df' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define pt  Rf_pt
             ^
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rmath.h:236:13: note: 'Rf_df' was declared here
 #define df  Rf_df
             ^
qpgraph.c:5082:16: note: in expansion of macro 'df'
   int    k, l, df, n_upper_tri;
                ^
qpgraph.c: In function 'qp_fast_edge_nrr':
qpgraph.c:5454:11: warning: 'pcorR' may be used uninitialized in this function [-Wmaybe-uninitialized]
   SEXP    pcorR;
           ^
qpgraph.c: In function 'qp_ci_test_hmgm.isra.9':
qpgraph.c:3976:36: warning: 'rss1' may be used uninitialized in this function [-Wmaybe-uninitialized]
       *partial_eta_squared = (rss1 - rss2) / rss0;
                                    ^
qpgraph.c:3703:11: note: 'rss1' was declared here
   double  rss1, rss2;
           ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c reorder.c -o reorder.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lRblas -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qpgraph' as qpgraph_2.10.2.zip
* DONE (qpgraph)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'qpgraph' successfully unpacked and MD5 sums checked