Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N [O] P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: INSTALL report for openCyto on tokay2

This page was generated on 2017-10-18 14:22:58 -0400 (Wed, 18 Oct 2017).

Package 926/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
openCyto 1.14.0
Mike Jiang
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/openCyto
Branch: RELEASE_3_5
Last Commit: 4417e47
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: openCyto
Version: 1.14.0
Command: rm -rf openCyto.buildbin-libdir && mkdir openCyto.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/openCyto_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=openCyto.buildbin-libdir --merge-multiarch openCyto_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL openCyto_1.14.0.zip && rm openCyto_1.14.0.tar.gz openCyto_1.14.0.zip
StartedAt: 2017-10-17 18:45:22 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:46:05 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 43.1 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf openCyto.buildbin-libdir && mkdir openCyto.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/openCyto_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=openCyto.buildbin-libdir --merge-multiarch openCyto_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL openCyto_1.14.0.zip  && rm openCyto_1.14.0.tar.gz openCyto_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  4  330k    4 14357    0     0  19105      0  0:00:17 --:--:--  0:00:17 19117
100  330k  100  330k    0     0   429k      0 --:--:-- --:--:-- --:--:--  430k

install for i386

* installing *source* package 'openCyto' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c misc.cpp -o misc.o
misc.cpp: In function 'Rcpp::NumericMatrix collapseData(Rcpp::List, Rcpp::StringVector)':
misc.cpp:10:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(unsigned i = 0; i < mat_list.size(); i++){
                        ^
misc.cpp:21:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(unsigned ind = 0; ind < mat_list.size(); ind++){
                               ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c unlockNamespace.c -o unlockNamespace.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/openCyto.buildbin-libdir/openCyto/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'openCyto' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c misc.cpp -o misc.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c unlockNamespace.c -o unlockNamespace.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/openCyto.buildbin-libdir/openCyto/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'openCyto' as openCyto_1.14.0.zip
* DONE (openCyto)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'openCyto' successfully unpacked and MD5 sums checked