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BioC 3.5: INSTALL report for methylKit on malbec2

This page was generated on 2017-10-18 14:17:53 -0400 (Wed, 18 Oct 2017).

Package 805/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylKit 1.2.4
Altuna Akalin
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/methylKit
Branch: RELEASE_3_5
Last Commit: 066892b
Last Changed Date: 2017-08-24 09:55:33 -0400 (Thu, 24 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: methylKit
Version: 1.2.4
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL methylKit
StartedAt: 2017-10-17 18:08:49 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:09:21 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 31.5 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL methylKit
###
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* installing to library ‘/home/biocbuild/bbs-3.5-bioc/R/library’
* installing *source* package ‘methylKit’ ...
** libs
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG  -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/zlibbioc/include" -I/usr/local/include   -fpic  -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG  -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/zlibbioc/include" -I/usr/local/include   -fpic  -g -O2 -c methCall.cpp -o methCall.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o methylKit.so RcppExports.o methCall.o -L/home/biocbuild/bbs-3.5-bioc/R/library/Rhtslib/lib -Wl,-rpath,/home/biocbuild/bbs-3.5-bioc/R/library/Rhtslib/lib -lhts -lz -pthread -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.5-bioc/R/library/methylKit/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (methylKit)