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BioC 3.5: BUILD BIN report for metahdep on veracruz2

This page was generated on 2017-10-18 14:28:43 -0400 (Wed, 18 Oct 2017).

Package 793/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metahdep 1.34.0
John R. Stevens
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/metahdep
Branch: RELEASE_3_5
Last Commit: 48f213a
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: metahdep
Version: 1.34.0
Command: rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metahdep_1.34.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R metahdep.buildbin-libdir
StartedAt: 2017-10-18 11:09:42 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 11:09:52 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 10.3 seconds
RetCode: 0
Status:  OK 
PackageFile: metahdep_1.34.0.tgz
PackageFileSize: 480 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metahdep_1.34.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R metahdep.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=metahdep.buildbin-libdir metahdep_1.34.0.tar.gz'
>>>>>>> 

* installing *source* package ‘metahdep’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c metahdep.c -o metahdep.o
metahdep.c:471:79: warning: incompatible pointer to integer conversion passing 'const char *' to parameter of type 'char' [-Wint-conversion]
                                index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
                                                                                                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:463:18: note: expanded from macro 'CHAR'
#define CHAR(x)         R_CHAR(x)
                        ^˜˜˜˜˜˜˜˜
metahdep.c:372:103: note: passing argument to parameter 'chipset_name' here
SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
                                                                                                      ^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o metahdep.so metahdep.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/metahdep.buildbin-libdir/metahdep/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (metahdep)


>>>>>>> 
>>>>>>> FIXING LINKS FOR metahdep.buildbin-libdir/metahdep/libs//metahdep.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "metahdep.buildbin-libdir/metahdep/libs//metahdep.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "metahdep.buildbin-libdir/metahdep/libs//metahdep.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "metahdep.buildbin-libdir/metahdep/libs//metahdep.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "metahdep.buildbin-libdir/metahdep/libs//metahdep.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "metahdep.buildbin-libdir/metahdep/libs//metahdep.so"