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BioC 3.5: CHECK report for mcaGUI on malbec2

This page was generated on 2017-10-18 14:14:02 -0400 (Wed, 18 Oct 2017).

Package 768/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mcaGUI 1.24.0
Wade K. Copeland
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/mcaGUI
Branch: RELEASE_3_5
Last Commit: b41cd2a
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ ERROR ]
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: mcaGUI
Version: 1.24.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings mcaGUI_1.24.0.tar.gz
StartedAt: 2017-10-18 00:33:59 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 00:34:05 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 5.5 seconds
RetCode: 1
Status:  ERROR 
CheckDir: mcaGUI.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings mcaGUI_1.24.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/mcaGUI.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mcaGUI/DESCRIPTION’ ... OK
* this is package ‘mcaGUI’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘iplots’

Depends: includes the non-default packages:
  ‘lattice’ ‘MASS’ ‘proto’ ‘foreign’ ‘gWidgets’ ‘gWidgetsRGtk2’
  ‘OTUbase’ ‘vegan’ ‘bpca’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mcaGUI’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.5-bioc/meat/mcaGUI.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-bioc/meat/mcaGUI.Rcheck/00check.log’
for details.

mcaGUI.Rcheck/00install.out:

* installing *source* package ‘mcaGUI’ ...
** R
** inst
** preparing package for lazy loading
R session is headless; GTK+ not initialized.

(R:16008): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
Error: package or namespace load failed for ‘cairoDevice’:
 .onLoad failed in loadNamespace() for 'cairoDevice', details:
  call: fun(libname, pkgname)
  error: GDK display not found - please make sure X11 is running
Error : package ‘cairoDevice’ could not be loaded
ERROR: lazy loading failed for package ‘mcaGUI’
* removing ‘/home/biocbuild/bbs-3.5-bioc/meat/mcaGUI.Rcheck/mcaGUI’