matter 1.2.0
Kylie A. Bemis
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/matter | | Branch: RELEASE_3_5 | | Last Commit: 446502a | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL matter
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* installing to library ‘/home/biocbuild/bbs-3.5-bioc/R/library’
* installing *source* package ‘matter’ ...
** libs
g++ -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c init.cpp -o init.o
g++ -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c matter.cpp -o matter.o
In file included from matter.cpp:4:0:
matter.h: In member function ‘index_t Atoms::write_indices(RType*, Rindex_t*, long int, size_t) [with RType = unsigned char; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:626:20: warning: ‘numWrote’ may be used uninitialized in this function [-Wmaybe-uninitialized]
return numWrote;
^
matter.h: In member function ‘index_t Atoms::write_indices(RType*, Rindex_t*, long int, size_t) [with RType = int; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:626:20: warning: ‘numWrote’ may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.h: In member function ‘index_t Atoms::write_indices(RType*, Rindex_t*, long int, size_t) [with RType = double; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:626:20: warning: ‘numWrote’ may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.h: In member function ‘index_t Atoms::read_indices(RType*, Rindex_t*, long int, size_t) [with RType = unsigned char; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:603:20: warning: ‘numRead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
return numRead;
^
matter.h: In member function ‘index_t Atoms::read_indices(RType*, Rindex_t*, long int, size_t) [with RType = int; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:603:20: warning: ‘numRead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.cpp: In function ‘double var(MatterIterator<double>&, bool)’:
matter.cpp:2119:60: warning: ‘s_new’ may be used uninitialized in this function [-Wmaybe-uninitialized]
s_new = s_old + (*x - m_old) * (*x - m_new);
^
matter.cpp:2118:37: warning: ‘m_new’ may be used uninitialized in this function [-Wmaybe-uninitialized]
m_new = m_old + (*x - m_old) / n;
^
In file included from matter.cpp:4:0:
matter.h: In member function ‘index_t Atoms::read_indices(RType*, Rindex_t*, long int, size_t) [with RType = double; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:603:20: warning: ‘numRead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
return numRead;
^
g++ -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c utils.cpp -o utils.o
g++ -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o matter.so init.o matter.o utils.o -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.5-bioc/R/library/matter/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for ‘apply’ in package ‘matter’
Creating a new generic function for ‘scale’ in package ‘matter’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (matter)