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BioC 3.5: INSTALL report for gdsfmt on tokay2

This page was generated on 2017-10-18 14:24:21 -0400 (Wed, 18 Oct 2017).

Package 500/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gdsfmt 1.12.0
Xiuwen Zheng
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/gdsfmt
Branch: RELEASE_3_5
Last Commit: d705a95
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: gdsfmt
Version: 1.12.0
Command: rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/gdsfmt_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=gdsfmt.buildbin-libdir --merge-multiarch gdsfmt_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL gdsfmt_1.12.0.zip && rm gdsfmt_1.12.0.tar.gz gdsfmt_1.12.0.zip
StartedAt: 2017-10-17 18:09:10 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:16:09 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 418.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/gdsfmt_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=gdsfmt.buildbin-libdir --merge-multiarch gdsfmt_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL gdsfmt_1.12.0.zip  && rm gdsfmt_1.12.0.tar.gz gdsfmt_1.12.0.zip
###
##############################################################################
##############################################################################


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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2173k  100 2173k    0     0  9601k      0 --:--:-- --:--:-- --:--:-- 9661k

install for i386

* installing *source* package 'gdsfmt' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c R_CoreArray.cpp -o R_CoreArray.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c gdsfmt.cpp -o gdsfmt.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c digest.cpp -o digest.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dAny.cpp -o CoreArray/dAny.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dBase.cpp -o CoreArray/dBase.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dFile.cpp -o CoreArray/dFile.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dStream.cpp -o CoreArray/dStream.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/adler32.c -o ZLIB/adler32.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/compress.c -o ZLIB/compress.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/crc32.c -o ZLIB/crc32.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/deflate.c -o ZLIB/deflate.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/infback.c -o ZLIB/infback.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inffast.c -o ZLIB/inffast.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inflate.c -o ZLIB/inflate.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inftrees.c -o ZLIB/inftrees.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/trees.c -o ZLIB/trees.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/uncompr.c -o ZLIB/uncompr.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/zutil.c -o ZLIB/zutil.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4.c -o LZ4/lz4.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4hc.c -o LZ4/lz4hc.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4frame.c -o LZ4/lz4frame.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.3-win.zip
cp XZ/xz-5.2.3/i386/liblzma.a .
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o liblzma.a -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'gdsfmt' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c R_CoreArray.cpp -o R_CoreArray.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c gdsfmt.cpp -o gdsfmt.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c digest.cpp -o digest.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dAny.cpp -o CoreArray/dAny.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dBase.cpp -o CoreArray/dBase.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dFile.cpp -o CoreArray/dFile.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dStream.cpp -o CoreArray/dStream.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/adler32.c -o ZLIB/adler32.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/compress.c -o ZLIB/compress.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/crc32.c -o ZLIB/crc32.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/deflate.c -o ZLIB/deflate.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/infback.c -o ZLIB/infback.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inffast.c -o ZLIB/inffast.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inflate.c -o ZLIB/inflate.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inftrees.c -o ZLIB/inftrees.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/trees.c -o ZLIB/trees.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/uncompr.c -o ZLIB/uncompr.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/zutil.c -o ZLIB/zutil.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4.c -o LZ4/lz4.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4hc.c -o LZ4/lz4hc.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4frame.c -o LZ4/lz4frame.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.3-win.zip
cp XZ/xz-5.2.3/x64/liblzma.a .
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o liblzma.a -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gdsfmt' as gdsfmt_1.12.0.zip
* DONE (gdsfmt)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'gdsfmt' successfully unpacked and MD5 sums checked