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BioC 3.5: CHECK report for SQUADD on tokay2

This page was generated on 2017-10-18 14:20:52 -0400 (Wed, 18 Oct 2017).

Package 1264/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SQUADD 1.26.0
Martial Sankar
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/SQUADD
Branch: RELEASE_3_5
Last Commit: f1ac3ed
Last Changed Date: 2017-09-01 01:24:32 -0400 (Fri, 01 Sep 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SQUADD
Version: 1.26.0
Command: rm -rf SQUADD.buildbin-libdir SQUADD.Rcheck && mkdir SQUADD.buildbin-libdir SQUADD.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SQUADD.buildbin-libdir SQUADD_1.26.0.tar.gz >SQUADD.Rcheck\00install.out 2>&1 && cp SQUADD.Rcheck\00install.out SQUADD-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=SQUADD.buildbin-libdir --install="check:SQUADD-install.out" --force-multiarch --no-vignettes --timings SQUADD_1.26.0.tar.gz
StartedAt: 2017-10-18 03:13:34 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 03:14:09 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 35.1 seconds
RetCode: 0
Status:  OK  
CheckDir: SQUADD.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SQUADD.buildbin-libdir SQUADD.Rcheck && mkdir SQUADD.buildbin-libdir SQUADD.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SQUADD.buildbin-libdir SQUADD_1.26.0.tar.gz >SQUADD.Rcheck\00install.out 2>&1 && cp SQUADD.Rcheck\00install.out SQUADD-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=SQUADD.buildbin-libdir --install="check:SQUADD-install.out" --force-multiarch --no-vignettes --timings SQUADD_1.26.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/SQUADD.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SQUADD/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SQUADD' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SQUADD' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

SQUADD.Rcheck/00install.out:


install for i386

* installing *source* package 'SQUADD' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'SQUADD' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SQUADD' as SQUADD_1.26.0.zip
* DONE (SQUADD)

SQUADD.Rcheck/examples_i386/SQUADD-Ex.timings:

nameusersystemelapsed
SquadSimResServiceImpl-class0.620.000.62
getFittedTable0.220.000.22
plotCC0.180.000.17
plotPredMap0.680.020.70
plotSimMatrix0.110.000.11

SQUADD.Rcheck/examples_x64/SQUADD-Ex.timings:

nameusersystemelapsed
SquadSimResServiceImpl-class0.500.040.54
getFittedTable0.160.000.16
plotCC0.100.000.09
plotPredMap0.750.000.75
plotSimMatrix0.120.000.12