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BioC 3.5: INSTALL report for S4Vectors on tokay2

This page was generated on 2017-10-18 14:23:31 -0400 (Wed, 18 Oct 2017).

Package 1170/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
S4Vectors 0.14.7
Bioconductor Package Maintainer
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/S4Vectors
Branch: RELEASE_3_5
Last Commit: c00fffd
Last Changed Date: 2017-10-06 22:04:46 -0400 (Fri, 06 Oct 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ ERROR ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  ERROR  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: S4Vectors
Version: 0.14.7
Command: rm -rf S4Vectors.buildbin-libdir && mkdir S4Vectors.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/S4Vectors_0.14.7.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=S4Vectors.buildbin-libdir --merge-multiarch S4Vectors_0.14.7.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL S4Vectors_0.14.7.zip && rm S4Vectors_0.14.7.tar.gz S4Vectors_0.14.7.zip
StartedAt: 2017-10-17 18:11:56 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:12:04 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 8.0 seconds
RetCode: 1
Status:  ERROR  

Command output

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###
### Running command:
###
###   rm -rf S4Vectors.buildbin-libdir && mkdir S4Vectors.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/S4Vectors_0.14.7.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=S4Vectors.buildbin-libdir --merge-multiarch S4Vectors_0.14.7.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL S4Vectors_0.14.7.zip  && rm S4Vectors_0.14.7.tar.gz S4Vectors_0.14.7.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  2  641k    2 14357    0     0  32199      0  0:00:20 --:--:--  0:00:20 32262
100  641k  100  641k    0     0  1301k      0 --:--:-- --:--:-- --:--:-- 1303k

install for i386

* installing *source* package 'S4Vectors' ...
** libs
C:\Rtools\mingw_32\bin\nm.exe: AEbufs.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: DataFrame_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: Hits_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: Linteger_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: List_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: R_init_S4Vectors.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: Rle_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: Rle_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: SEXP_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: SimpleList_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: anyMissing.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: eval_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: hash_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: int_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: logical_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: map_ranges_to_runs.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: safe_arithm.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: sort_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: str_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: subsetting_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: vector_utils.o: File format not recognized
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o S4Vectors.dll tmp.def AEbufs.o DataFrame_class.o Hits_class.o Linteger_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o eval_utils.o hash_utils.o int_utils.o logical_utils.o map_ranges_to_runs.o safe_arithm.o sort_utils.o str_utils.o subsetting_utils.o vector_utils.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
AEbufs.o: file not recognized: File format not recognized
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'S4Vectors'
* removing 'C:/Users/biocbuild/bbs-3.5-bioc/meat/S4Vectors.buildbin-libdir/S4Vectors'
Warning: running command 'C:/Users/biocbuild/bbs-3.5-bioc/R/bin/i386/Rcmd.exe INSTALL --library=S4Vectors.buildbin-libdir S4Vectors_0.14.7.tar.gz --no-multiarch' had status 1