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BioC 3.5: CHECK report for RankProd on tokay2

This page was generated on 2017-10-18 14:19:06 -0400 (Wed, 18 Oct 2017).

Package 1060/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RankProd 3.2.0
Francesco Del Carratore
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/RankProd
Branch: RELEASE_3_5
Last Commit: abf5770
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RankProd
Version: 3.2.0
Command: rm -rf RankProd.buildbin-libdir RankProd.Rcheck && mkdir RankProd.buildbin-libdir RankProd.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RankProd.buildbin-libdir RankProd_3.2.0.tar.gz >RankProd.Rcheck\00install.out 2>&1 && cp RankProd.Rcheck\00install.out RankProd-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=RankProd.buildbin-libdir --install="check:RankProd-install.out" --force-multiarch --no-vignettes --timings RankProd_3.2.0.tar.gz
StartedAt: 2017-10-18 02:21:25 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 02:22:34 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 68.9 seconds
RetCode: 0
Status:  OK  
CheckDir: RankProd.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RankProd.buildbin-libdir RankProd.Rcheck && mkdir RankProd.buildbin-libdir RankProd.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RankProd.buildbin-libdir RankProd_3.2.0.tar.gz >RankProd.Rcheck\00install.out 2>&1 && cp RankProd.Rcheck\00install.out RankProd-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=RankProd.buildbin-libdir --install="check:RankProd-install.out" --force-multiarch --no-vignettes --timings RankProd_3.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/RankProd.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RankProd/DESCRIPTION' ... OK
* this is package 'RankProd' version '3.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RankProd' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RankProd.Rcheck/00install.out:


install for i386

* installing *source* package 'RankProd' ...
** R
** data
** inst
** preparing package for lazy loading
[1] "this is the new version of the RankProd package"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RankProd' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RankProd' as RankProd_3.2.0.zip
* DONE (RankProd)

RankProd.Rcheck/examples_i386/RankProd-Ex.timings:

nameusersystemelapsed
Apples0.030.000.03
RP0.390.000.39
RP.advance2.300.012.32
RPadvance1.000.051.04
RSadvance0.670.000.68
RankProducts0.730.010.75
plotRP0.240.000.23
topGene0.590.000.59

RankProd.Rcheck/examples_x64/RankProd-Ex.timings:

nameusersystemelapsed
Apples0.030.000.04
RP0.490.010.50
RP.advance3.100.023.11
RPadvance1.520.011.53
RSadvance1.620.001.62
RankProducts1.530.001.53
plotRP0.570.000.56
topGene1.250.011.27