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BioC 3.5: CHECK report for RTNduals on tokay2

This page was generated on 2017-10-18 14:26:53 -0400 (Wed, 18 Oct 2017).

Package 1161/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTNduals 1.0.3
Vinicius Chagas , Mauro Castro , Clarice Groeneveld
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/RTNduals
Branch: RELEASE_3_5
Last Commit: 4665699
Last Changed Date: 2017-05-05 15:33:52 -0400 (Fri, 05 May 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RTNduals
Version: 1.0.3
Command: rm -rf RTNduals.buildbin-libdir RTNduals.Rcheck && mkdir RTNduals.buildbin-libdir RTNduals.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTNduals.buildbin-libdir RTNduals_1.0.3.tar.gz >RTNduals.Rcheck\00install.out 2>&1 && cp RTNduals.Rcheck\00install.out RTNduals-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=RTNduals.buildbin-libdir --install="check:RTNduals-install.out" --force-multiarch --no-vignettes --timings RTNduals_1.0.3.tar.gz
StartedAt: 2017-10-18 02:47:08 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 02:52:24 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 316.4 seconds
RetCode: 0
Status:  OK  
CheckDir: RTNduals.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RTNduals.buildbin-libdir RTNduals.Rcheck && mkdir RTNduals.buildbin-libdir RTNduals.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTNduals.buildbin-libdir RTNduals_1.0.3.tar.gz >RTNduals.Rcheck\00install.out 2>&1 && cp RTNduals.Rcheck\00install.out RTNduals-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=RTNduals.buildbin-libdir --install="check:RTNduals-install.out" --force-multiarch --no-vignettes --timings RTNduals_1.0.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/RTNduals.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RTNduals/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTNduals' version '1.0.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RTNduals' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
mbrAssociation-methods 10.08   0.60   11.04
mbrDuals-methods        9.66   0.60   10.25
mbrPlotDuals            8.41   0.53    8.93
mbrDpiFilter-methods    7.86   0.56    8.42
mbrPermutation-methods  8.02   0.20    8.22
mbrBootstrap-methods    7.77   0.34    8.11
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
mbrDuals-methods       10.39   0.66   11.05
mbrAssociation-methods  9.86   0.48   10.35
mbrDpiFilter-methods    9.13   0.43    9.56
mbrPlotDuals            8.08   0.50    8.58
mbrBootstrap-methods    7.35   0.49    7.82
mbrPermutation-methods  6.78   0.29    7.08
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RTNduals.Rcheck/00install.out:


install for i386

* installing *source* package 'RTNduals' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RTNduals' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTNduals' as RTNduals_1.0.3.zip
* DONE (RTNduals)

RTNduals.Rcheck/examples_i386/RTNduals-Ex.timings:

nameusersystemelapsed
mbrAssociation-methods10.08 0.6011.04
mbrBootstrap-methods7.770.348.11
mbrDpiFilter-methods7.860.568.42
mbrDuals-methods 9.66 0.6010.25
mbrGet-methods2.390.062.45
mbrPermutation-methods8.020.208.22
mbrPlotDuals8.410.538.93
mbrPreprocess-methods2.250.032.28
tni2mbrPreprocess-methods1.250.001.25

RTNduals.Rcheck/examples_x64/RTNduals-Ex.timings:

nameusersystemelapsed
mbrAssociation-methods 9.86 0.4810.35
mbrBootstrap-methods7.350.497.82
mbrDpiFilter-methods9.130.439.56
mbrDuals-methods10.39 0.6611.05
mbrGet-methods2.980.053.03
mbrPermutation-methods6.780.297.08
mbrPlotDuals8.080.508.58
mbrPreprocess-methods3.000.073.06
tni2mbrPreprocess-methods1.050.031.08