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BioC 3.5: CHECK report for RTN on tokay2

This page was generated on 2017-10-18 14:22:48 -0400 (Wed, 18 Oct 2017).

Package 1160/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTN 1.14.1
Mauro Castro
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/RTN
Branch: RELEASE_3_5
Last Commit: 1740d71
Last Changed Date: 2017-07-15 15:39:32 -0400 (Sat, 15 Jul 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RTN
Version: 1.14.1
Command: rm -rf RTN.buildbin-libdir RTN.Rcheck && mkdir RTN.buildbin-libdir RTN.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTN.buildbin-libdir RTN_1.14.1.tar.gz >RTN.Rcheck\00install.out 2>&1 && cp RTN.Rcheck\00install.out RTN-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=RTN.buildbin-libdir --install="check:RTN-install.out" --force-multiarch --no-vignettes --timings RTN_1.14.1.tar.gz
StartedAt: 2017-10-18 02:46:44 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 02:51:40 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 296.0 seconds
RetCode: 0
Status:  OK  
CheckDir: RTN.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RTN.buildbin-libdir RTN.Rcheck && mkdir RTN.buildbin-libdir RTN.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTN.buildbin-libdir RTN_1.14.1.tar.gz >RTN.Rcheck\00install.out 2>&1 && cp RTN.Rcheck\00install.out RTN-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=RTN.buildbin-libdir --install="check:RTN-install.out" --force-multiarch --no-vignettes --timings RTN_1.14.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/RTN.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RTN/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTN' version '1.14.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RTN' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.4Mb
  sub-directories of 1Mb or more:
    data   9.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/RTN.Rcheck/00check.log'
for details.


RTN.Rcheck/00install.out:


install for i386

* installing *source* package 'RTN' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RTN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTN' as RTN_1.14.1.zip
* DONE (RTN)

RTN.Rcheck/examples_i386/RTN-Ex.timings:

nameusersystemelapsed
AVS-class000
RTN.data1.470.031.50
TNA-class000
TNI-class1.360.031.39
TNI.data0.330.000.33
avs.evse0.020.000.02
avs.get000
avs.plot1000
avs.plot2000
avs.preprocess.LD1000gRel20130502000
avs.preprocess.LDHapMapRel270.010.000.01
avs.vse000
tna.get1.330.041.36
tna.graph1.50.01.5
tna.gsea11.50.01.5
tna.gsea21.320.001.32
tna.mra1.350.011.36
tna.overlap1.610.061.68
tna.plot.gsea11.370.021.39
tna.plot.gsea21.330.021.34
tna.shadow1.360.001.36
tna.synergy1.310.011.33
tni.bootstrap1.360.021.37
tni.conditional1.130.001.13
tni.dpi.filter1.250.021.27
tni.get1.330.011.34
tni.graph1.030.001.03
tni.gsea21.420.021.44
tni.permutation1.120.031.16
tni.preprocess2.020.082.09
tni2tna.preprocess1.060.001.06

RTN.Rcheck/examples_x64/RTN-Ex.timings:

nameusersystemelapsed
AVS-class000
RTN.data1.50.11.6
TNA-class000
TNI-class1.310.011.33
TNI.data0.220.000.22
avs.evse000
avs.get000
avs.plot1000
avs.plot2000
avs.preprocess.LD1000gRel20130502000
avs.preprocess.LDHapMapRel27000
avs.vse000
tna.get1.060.091.15
tna.graph1.010.021.03
tna.gsea11.070.011.08
tna.gsea21.650.051.70
tna.mra1.380.011.39
tna.overlap1.320.041.34
tna.plot.gsea11.420.031.45
tna.plot.gsea21.180.011.21
tna.shadow1.130.021.14
tna.synergy1.280.031.31
tni.bootstrap0.970.000.97
tni.conditional1.080.081.15
tni.dpi.filter1.150.041.21
tni.get1.140.071.21
tni.graph1.190.031.21
tni.gsea21.090.001.10
tni.permutation0.950.000.96
tni.preprocess2.330.082.41
tni2tna.preprocess0.970.031.00