RNAither 2.24.0
Lars Kaderali
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/RNAither | | Branch: RELEASE_3_5 | | Last Commit: 21be0e6 | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings RNAither_2.24.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/RNAither.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RNAither/DESCRIPTION’ ... OK
* this is package ‘RNAither’ version ‘2.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RNAither’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file in a non-standard place:
inst/extdata/CITATION
Most likely ‘inst/CITATION’ should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘methods’
All declared Imports should be used.
Package in Depends field not imported from: ‘RankProd’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
BScore: no visible global function definition for ‘medpolish’
BScore: no visible global function definition for ‘mad’
DRQualControl: no visible global function definition for ‘write.table’
DRQualControl: no visible global function definition for ‘axis’
DRQualControl: no visible global function definition for ‘pdf’
DRQualControl: no visible global function definition for ‘dev.off’
LiWongRank: no visible global function definition for ‘sd’
LiWongRank: no visible global function definition for ‘hist’
MannWhitney: no visible global function definition for ‘var’
MannWhitney: no visible global function definition for ‘wilcox.test’
PlotSpatialDistrib: no visible global function definition for ‘jpeg’
PlotSpatialDistrib: no visible global function definition for
‘brewer.pal’
PlotSpatialDistrib: no visible global function definition for ‘dev.off’
RankProduct: no visible global function definition for ‘RP’
SNRQualControl: no visible global function definition for ‘read.table’
SNRQualControl: no visible global function definition for ‘hist’
SNRQualControl: no visible global function definition for ‘x11’
SNRQualControl: no visible global function definition for ‘par’
SNRQualControl: no visible global function definition for ‘pdf’
SNRQualControl: no visible global function definition for ‘dev.off’
Ttest: no visible global function definition for ‘var’
Ttest: no visible global function definition for ‘t.test’
ZPRIMEQualControl: no visible global function definition for
‘write.table’
ZPRIMEQualControl: no visible global function definition for ‘axis’
ZPRIMEQualControl: no visible global function definition for ‘pdf’
ZPRIMEQualControl: no visible global function definition for ‘dev.off’
ZPRIMEQualControl: no visible global function definition for ‘png’
ZPRIMEQualControl: no visible global function definition for
‘read.table’
ZPrime: no visible global function definition for ‘mad’
ZPrime: no visible global function definition for ‘median’
ZScore: no visible global function definition for ‘mad’
ZScore: no visible global function definition for ‘median’
ZScorePerScreen: no visible global function definition for ‘mad’
ZScorePerScreen: no visible global function definition for ‘median’
ZScorePlot: no visible global function definition for ‘sd’
ZScorePlot: no visible global function definition for ‘axis’
ZScorePlot: no visible global function definition for ‘abline’
ZScorePlot: no visible global function definition for ‘identify’
ZScorePlot: no visible global function definition for ‘pdf’
ZScorePlot: no visible global function definition for ‘dev.off’
ZScorePlot: no visible global function definition for ‘png’
ZScorePlotTwo: no visible global function definition for ‘sd’
ZScorePlotTwo: no visible global function definition for ‘median’
ZScorePlotTwo: no visible global function definition for ‘mad’
ZScorePlotTwo: no visible global function definition for ‘abline’
ZScorePlotTwo: no visible global function definition for ‘identify’
ZScorePlotTwo: no visible global function definition for ‘pdf’
ZScorePlotTwo: no visible global function definition for ‘dev.off’
ZScorePlotTwo: no visible global function definition for ‘png’
ZScorePlotTwo: no visible global function definition for ‘plot.new’
ZScorePlotTwo: no visible global function definition for ‘text’
channelPlot: no visible global function definition for ‘x11’
channelPlot: no visible global function definition for ‘lowess’
channelPlot: no visible global function definition for ‘pdf’
channelPlot: no visible global function definition for ‘dev.off’
channelPlot: no visible global function definition for ‘png’
compareReplicaPlates: no visible global function definition for ‘x11’
compareReplicaPlates: no visible global function definition for ‘par’
compareReplicaPlates: no visible global function definition for ‘mtext’
compareReplicaPlates: no visible global function definition for ‘pdf’
compareReplicaPlates: no visible global function definition for
‘dev.off’
compareReplicateSD: no visible global function definition for ‘sd’
compareReplicateSD: no visible global function definition for ‘x11’
compareReplicateSD: no visible global function definition for
‘brewer.pal’
compareReplicateSD: no visible global function definition for ‘png’
compareReplicateSD: no visible global function definition for ‘dev.off’
compareReplicateSDPerScreen: no visible global function definition for
‘sd’
compareReplicateSDPerScreen: no visible global function definition for
‘x11’
compareReplicateSDPerScreen: no visible global function definition for
‘brewer.pal’
compareReplicateSDPerScreen: no visible global function definition for
‘png’
compareReplicateSDPerScreen: no visible global function definition for
‘dev.off’
compareReplicates: no visible global function definition for ‘x11’
compareReplicates: no visible global function definition for ‘par’
compareReplicates: no visible global function definition for ‘points’
compareReplicates: no visible global function definition for ‘mtext’
compareReplicates: no visible global function definition for ‘identify’
compareReplicates: no visible global function definition for ‘pdf’
compareReplicates: no visible global function definition for ‘dev.off’
compareReplicates: no visible global function definition for ‘png’
controlDensity: no visible global function definition for ‘density’
controlDensity: no visible global function definition for ‘hist’
controlDensity: no visible global function definition for ‘par’
controlDensity: no visible global function definition for ‘axis’
controlDensity: no visible global function definition for ‘abline’
controlDensity: no visible global function definition for ‘legend’
controlDensity: no visible global function definition for ‘pdf’
controlDensity: no visible global function definition for ‘dev.off’
controlDensity: no visible global function definition for ‘png’
controlDensityPerPlate: no visible global function definition for ‘x11’
controlDensityPerPlate: no visible global function definition for ‘par’
controlDensityPerPlate: no visible global function definition for
‘density’
controlDensityPerPlate: no visible global function definition for
‘hist’
controlDensityPerPlate: no visible global function definition for
‘axis’
controlDensityPerPlate: no visible global function definition for
‘abline’
controlDensityPerPlate: no visible global function definition for
‘legend’
controlDensityPerPlate: no visible global function definition for ‘pdf’
controlDensityPerPlate: no visible global function definition for
‘plot.new’
controlDensityPerPlate: no visible global function definition for
‘text’
controlDensityPerPlate: no visible global function definition for
‘dev.off’
controlDensityPerPlate: no visible global function definition for ‘png’
controlDensityPerScreen: no visible global function definition for
‘par’
controlDensityPerScreen: no visible global function definition for
‘density’
controlDensityPerScreen: no visible global function definition for
‘hist’
controlDensityPerScreen: no visible global function definition for
‘axis’
controlDensityPerScreen: no visible global function definition for
‘abline’
controlDensityPerScreen: no visible global function definition for
‘legend’
controlDensityPerScreen: no visible global function definition for
‘pdf’
controlDensityPerScreen: no visible global function definition for
‘dev.off’
controlDensityPerScreen: no visible global function definition for
‘png’
controlNorm: no visible global function definition for ‘median’
doCtrlNorm: no visible global function definition for ‘median’
doCtrlNorm: no visible global function definition for ‘mad’
doPercNegNorm: no visible global function definition for ‘median’
doPocNorm: no visible global function definition for ‘median’
function1: no visible global function definition for ‘write.table’
function2: no visible global function definition for ‘write.table’
function2b: no visible global function definition for ‘write.table’
function2c: no visible global function definition for ‘write.table’
function3: no visible global function definition for ‘write.table’
function4a: no visible global function definition for ‘write.table’
function4b: no visible global function definition for ‘write.table’
function5: no visible global function definition for ‘write.table’
function6: no visible global function definition for ‘write.table’
function7: no visible global function definition for ‘write.table’
generateDatasetFile: no visible global function definition for
‘write.table’
gseaAnalysis: no visible global function definition for ‘new’
gseaAnalysisPt2: no visible global function definition for ‘new’
gseaTableFunc: no visible global function definition for ‘write.table’
hitselectionPval: no visible global function definition for ‘median’
hitselectionPval: no visible global function definition for
‘write.table’
hitselectionZscore: no visible global function definition for
‘write.table’
hitselectionZscorePval: no visible global function definition for
‘write.table’
joinDatasetFiles: no visible global function definition for
‘read.table’
joinDatasetFiles: no visible global function definition for
‘write.table’
lowessNorm: no visible global function definition for ‘lowess’
mainAnalysis: no visible global function definition for ‘write.table’
mainAnalysis: no visible global function definition for ‘read.table’
mainAnalysis: no visible binding for global variable ‘median’
makeBoxplot4PlateType: no visible global function definition for ‘x11’
makeBoxplot4PlateType: no visible global function definition for
‘boxplot’
makeBoxplot4PlateType: no visible global function definition for
‘plot.new’
makeBoxplot4PlateType: no visible global function definition for ‘text’
makeBoxplot4PlateType: no visible global function definition for ‘pdf’
makeBoxplot4PlateType: no visible global function definition for
‘dev.off’
makeBoxplot4PlateType: no visible global function definition for ‘png’
makeBoxplotControls: no visible global function definition for
‘boxplot’
makeBoxplotControls: no visible global function definition for ‘pdf’
makeBoxplotControls: no visible global function definition for
‘dev.off’
makeBoxplotControls: no visible global function definition for ‘png’
makeBoxplotControlsPerPlate: no visible global function definition for
‘par’
makeBoxplotControlsPerPlate: no visible global function definition for
‘boxplot’
makeBoxplotControlsPerPlate: no visible global function definition for
‘plot.new’
makeBoxplotControlsPerPlate: no visible global function definition for
‘text’
makeBoxplotControlsPerPlate: no visible global function definition for
‘pdf’
makeBoxplotControlsPerPlate: no visible global function definition for
‘dev.off’
makeBoxplotControlsPerPlate: no visible global function definition for
‘png’
makeBoxplotControlsPerScreen: no visible global function definition for
‘par’
makeBoxplotControlsPerScreen: no visible global function definition for
‘boxplot’
makeBoxplotControlsPerScreen: no visible global function definition for
‘pdf’
makeBoxplotControlsPerScreen: no visible global function definition for
‘dev.off’
makeBoxplotControlsPerScreen: no visible global function definition for
‘png’
makeBoxplotOverview: no visible global function definition for ‘jpeg’
makeBoxplotOverview: no visible global function definition for
‘boxplot’
makeBoxplotOverview: no visible global function definition for
‘dev.off’
makeBoxplotPerPlate: no visible global function definition for ‘par’
makeBoxplotPerPlate: no visible global function definition for
‘boxplot’
makeBoxplotPerPlate: no visible global function definition for ‘pdf’
makeBoxplotPerPlate: no visible global function definition for
‘dev.off’
makeBoxplotPerPlate: no visible global function definition for ‘png’
makeBoxplotPerScreen: no visible global function definition for
‘boxplot’
makeBoxplotPerScreen: no visible global function definition for ‘pdf’
makeBoxplotPerScreen: no visible global function definition for
‘dev.off’
makeBoxplotPerScreen: no visible global function definition for ‘png’
makeCorrPlots: no visible global function definition for ‘jpeg’
makeCorrPlots: no visible global function definition for ‘cor’
makeCorrPlots: no visible global function definition for ‘dev.off’
makeCtrlBoxPlot: no visible global function definition for ‘jpeg’
makeCtrlBoxPlot: no visible global function definition for ‘boxplot’
makeCtrlBoxPlot: no visible global function definition for ‘dev.off’
makeCtrlDensityPlot: no visible global function definition for ‘jpeg’
makeCtrlDensityPlot: no visible global function definition for
‘density’
makeCtrlDensityPlot: no visible global function definition for ‘hist’
makeCtrlDensityPlot: no visible global function definition for
‘dev.off’
makeQCPlots: no visible global function definition for ‘jpeg’
makeQCPlots: no visible global function definition for ‘boxplot’
makeQCPlots: no visible global function definition for ‘dev.off’
makeScreenOverview: no visible global function definition for ‘jpeg’
makeScreenOverview: no visible global function definition for ‘dev.off’
makefullbarplot: no visible global function definition for ‘jpeg’
makefullbarplot: no visible global function definition for ‘abline’
makefullbarplot: no visible global function definition for ‘dev.off’
makevolcanoplot: no visible global function definition for ‘jpeg’
makevolcanoplot: no visible global function definition for ‘abline’
makevolcanoplot: no visible global function definition for ‘dev.off’
multTestAdjust: no visible global function definition for ‘p.adjust’
numCellQualControl: no visible global function definition for
‘read.table’
numCellQualControl: no visible global function definition for ‘sd’
numCellQualControl: no visible global function definition for ‘hist’
numCellQualControl: no visible global function definition for
‘write.table’
numCellQualControl: no visible global function definition for ‘pdf’
numCellQualControl: no visible global function definition for ‘dev.off’
percCellQualControl: no visible global function definition for
‘read.table’
percCellQualControl: no visible global function definition for ‘sd’
percCellQualControl: no visible global function definition for ‘hist’
percCellQualControl: no visible global function definition for
‘write.table’
percCellQualControl: no visible global function definition for ‘pdf’
percCellQualControl: no visible global function definition for
‘dev.off’
plotBar: no visible global function definition for ‘boxplot’
plotBar: no visible global function definition for ‘abline’
plotBar: no visible global function definition for ‘pdf’
plotBar: no visible global function definition for ‘dev.off’
plotBar: no visible global function definition for ‘png’
plotBar: no visible global function definition for ‘x11’
plotBarGeruest: no visible global function definition for ‘median’
plotBarGeruest: no visible global function definition for ‘mad’
plotControlHisto: no visible global function definition for ‘hist’
plotControlHisto: no visible global function definition for ‘par’
plotControlHisto: no visible global function definition for ‘legend’
plotControlHisto: no visible global function definition for ‘pdf’
plotControlHisto: no visible global function definition for ‘dev.off’
plotControlHisto: no visible global function definition for ‘png’
plotControlHistoPerplate: no visible global function definition for
‘x11’
plotControlHistoPerplate: no visible global function definition for
‘par’
plotControlHistoPerplate: no visible global function definition for
‘plot.new’
plotControlHistoPerplate: no visible global function definition for
‘text’
plotControlHistoPerplate: no visible global function definition for
‘hist’
plotControlHistoPerplate: no visible global function definition for
‘legend’
plotControlHistoPerplate: no visible global function definition for
‘mtext’
plotControlHistoPerplate: no visible global function definition for
‘pdf’
plotControlHistoPerplate: no visible global function definition for
‘dev.off’
plotControlHistoPerplate: no visible global function definition for
‘png’
plotControlHistoPerscreen: no visible global function definition for
‘par’
plotControlHistoPerscreen: no visible global function definition for
‘hist’
plotControlHistoPerscreen: no visible global function definition for
‘legend’
plotControlHistoPerscreen: no visible global function definition for
‘pdf’
plotControlHistoPerscreen: no visible global function definition for
‘dev.off’
plotControlHistoPerscreen: no visible global function definition for
‘png’
plotHisto: no visible global function definition for ‘hist’
plotHisto: no visible global function definition for ‘pdf’
plotHisto: no visible global function definition for ‘dev.off’
plotHisto: no visible global function definition for ‘png’
plotHistoPerplate: no visible global function definition for ‘x11’
plotHistoPerplate: no visible global function definition for ‘par’
plotHistoPerplate: no visible global function definition for ‘hist’
plotHistoPerplate: no visible global function definition for ‘mtext’
plotHistoPerplate: no visible global function definition for ‘pdf’
plotHistoPerplate: no visible global function definition for ‘dev.off’
plotHistoPerplate: no visible global function definition for ‘png’
plotHistoPerscreen: no visible global function definition for ‘par’
plotHistoPerscreen: no visible global function definition for ‘hist’
plotHistoPerscreen: no visible global function definition for ‘pdf’
plotHistoPerscreen: no visible global function definition for ‘dev.off’
plotHistoPerscreen: no visible global function definition for ‘png’
plotQQ: no visible global function definition for ‘qqnorm’
plotQQ: no visible global function definition for ‘qqline’
plotQQ: no visible global function definition for ‘pdf’
plotQQ: no visible global function definition for ‘dev.off’
plotQQ: no visible global function definition for ‘png’
plotQQperplate: no visible global function definition for ‘x11’
plotQQperplate: no visible global function definition for ‘par’
plotQQperplate: no visible global function definition for ‘qqnorm’
plotQQperplate: no visible global function definition for ‘qqline’
plotQQperplate: no visible global function definition for ‘mtext’
plotQQperplate: no visible global function definition for ‘plot.new’
plotQQperplate: no visible global function definition for ‘text’
plotQQperplate: no visible global function definition for ‘pdf’
plotQQperplate: no visible global function definition for ‘dev.off’
plotQQperplate: no visible global function definition for ‘png’
plotQQperscreen: no visible global function definition for ‘par’
plotQQperscreen: no visible global function definition for ‘qqnorm’
plotQQperscreen: no visible global function definition for ‘qqline’
plotQQperscreen: no visible global function definition for ‘pdf’
plotQQperscreen: no visible global function definition for ‘dev.off’
plotQQperscreen: no visible global function definition for ‘png’
plothist: no visible global function definition for ‘jpeg’
plothist: no visible global function definition for ‘hist’
plothist: no visible global function definition for ‘dev.off’
plotmybar: no visible global function definition for ‘median’
plotmybar: no visible global function definition for ‘mad’
plotmybar: no visible global function definition for ‘jpeg’
plotmybar: no visible global function definition for ‘boxplot’
plotmybar: no visible global function definition for ‘abline’
plotmybar: no visible global function definition for ‘dev.off’
plotqq: no visible global function definition for ‘jpeg’
plotqq: no visible global function definition for ‘dev.off’
plotscatter: no visible global function definition for ‘jpeg’
plotscatter: no visible global function definition for ‘lowess’
plotscatter: no visible global function definition for ‘dev.off’
replicatesCV: no visible global function definition for ‘par’
replicatesCV: no visible global function definition for ‘sd’
replicatesCV: no visible global function definition for ‘points’
replicatesCV: no visible global function definition for ‘identify’
replicatesCV: no visible global function definition for ‘pdf’
replicatesCV: no visible global function definition for ‘dev.off’
replicatesCV: no visible global function definition for ‘png’
replicatesSpearmancor: no visible global function definition for
‘write.table’
replicatesSpearmancor: no visible global function definition for ‘cor’
replicatesSpearmancor: no visible global function definition for
‘read.table’
rnaither: no visible global function definition for ‘new’
rnaither: no visible global function definition for ‘quantile’
rnaither: no visible binding for global variable ‘median’
saveDataset: no visible global function definition for ‘write.table’
savepValVec: no visible global function definition for ‘write.table’
spatialDistrib: no visible global function definition for ‘x11’
spatialDistrib: no visible global function definition for ‘brewer.pal’
spatialDistrib: no visible global function definition for ‘png’
spatialDistrib: no visible global function definition for ‘dev.off’
spatialDistrib: no visible global function definition for ‘plot.new’
spatialDistrib: no visible global function definition for ‘text’
summarizeReplicates: no visible global function definition for ‘median’
summarizeReplicates: no visible global function definition for ‘mad’
summarizeReplicates: no visible global function definition for ‘sd’
summarizeReplicates: no visible global function definition for ‘t.test’
summarizeReplicates: no visible global function definition for
‘wilcox.test’
varAdjust: no visible global function definition for ‘mad’
vennDiag: no visible global function definition for ‘pdf’
vennDiag: no visible global function definition for ‘dev.off’
vennDiag: no visible global function definition for ‘png’
volcanoPlot: no visible global function definition for ‘abline’
volcanoPlot: no visible global function definition for ‘identify’
volcanoPlot: no visible global function definition for ‘pdf’
volcanoPlot: no visible global function definition for ‘dev.off’
volcanoPlot: no visible global function definition for ‘png’
writehitlist: no visible global function definition for ‘write.table’
writehitlist: no visible binding for global variable ‘median’
writehitlist: no visible global function definition for ‘median’
writehitlist: no visible global function definition for ‘mad’
writehitlist: no visible global function definition for ‘sd’
writehitlist: no visible global function definition for ‘t.test’
writehitlist: no visible global function definition for ‘wilcox.test’
ylabCompute: no visible global function definition for ‘sd’
ylabCompute: no visible global function definition for ‘median’
ylabCompute: no visible global function definition for ‘mad’
Undefined global functions or variables:
RP abline axis boxplot brewer.pal cor density dev.off hist identify
jpeg legend lowess mad median medpolish mtext new p.adjust par pdf
plot.new png points qqline qqnorm quantile read.table sd t.test text
var wilcox.test write.table x11
Consider adding
importFrom("grDevices", "dev.off", "jpeg", "pdf", "png", "x11")
importFrom("graphics", "abline", "axis", "boxplot", "hist", "identify",
"legend", "mtext", "par", "plot.new", "points", "text")
importFrom("methods", "new")
importFrom("stats", "cor", "density", "lowess", "mad", "median",
"medpolish", "p.adjust", "qqline", "qqnorm", "quantile",
"sd", "t.test", "var", "wilcox.test")
importFrom("utils", "read.table", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
mainAnalysis 16.356 0.184 16.557
rnaither 8.456 0.048 8.526
gseaAnalysis 4.824 0.004 8.533
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.5-bioc/meat/RNAither.Rcheck/00check.log’
for details.
* installing *source* package ‘RNAither’ ...
** R
** data
** inst
** preparing package for lazy loading
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
* DONE (RNAither)