Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for RImmPort on tokay2

This page was generated on 2017-10-18 14:25:38 -0400 (Wed, 18 Oct 2017).

Package 1115/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RImmPort 1.4.2
Ravi Shankar
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/RImmPort
Branch: RELEASE_3_5
Last Commit: b1f46d0
Last Changed Date: 2017-06-26 18:29:44 -0400 (Mon, 26 Jun 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RImmPort
Version: 1.4.2
Command: rm -rf RImmPort.buildbin-libdir RImmPort.Rcheck && mkdir RImmPort.buildbin-libdir RImmPort.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RImmPort.buildbin-libdir RImmPort_1.4.2.tar.gz >RImmPort.Rcheck\00install.out 2>&1 && cp RImmPort.Rcheck\00install.out RImmPort-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=RImmPort.buildbin-libdir --install="check:RImmPort-install.out" --force-multiarch --no-vignettes --timings RImmPort_1.4.2.tar.gz
StartedAt: 2017-10-18 02:34:29 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 02:35:55 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 86.0 seconds
RetCode: 0
Status:  OK  
CheckDir: RImmPort.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RImmPort.buildbin-libdir RImmPort.Rcheck && mkdir RImmPort.buildbin-libdir RImmPort.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RImmPort.buildbin-libdir RImmPort_1.4.2.tar.gz >RImmPort.Rcheck\00install.out 2>&1 && cp RImmPort.Rcheck\00install.out RImmPort-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=RImmPort.buildbin-libdir --install="check:RImmPort-install.out" --force-multiarch --no-vignettes --timings RImmPort_1.4.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/RImmPort.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RImmPort/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RImmPort' version '1.4.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RImmPort' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RImmPort.Rcheck/00install.out:


install for i386

* installing *source* package 'RImmPort' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RImmPort' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RImmPort' as RImmPort_1.4.2.zip
* DONE (RImmPort)

RImmPort.Rcheck/examples_i386/RImmPort-Ex.timings:

nameusersystemelapsed
Events-class1.330.111.49
Findings-class1.380.001.38
Interventions-class0.390.000.39
SpecialPurpose-class0.450.020.47
Study-class0.460.010.47
TrialDesign-class0.470.020.48
buildNewSqliteDb000
getAssayDataOfStudies0.180.010.20
getDomainCode000
getDomainDataOfStudies0.070.000.07
getListOfAssayTypes000
getListOfDomains000
getListOfStudies0.050.000.05
getStudiesWithSpecificAssayData0.130.020.14
getStudiesWithSpecificDomainData0.050.010.07
getStudy0.430.020.45
loadSerializedStudyData0.020.000.02
mergeDomainAndSupplemental0.220.000.21
serialzeStudyData1.340.021.36
setImmPortDataSource0.040.000.05

RImmPort.Rcheck/examples_x64/RImmPort-Ex.timings:

nameusersystemelapsed
Events-class0.990.081.06
Findings-class1.750.001.75
Interventions-class0.580.000.58
SpecialPurpose-class0.860.030.89
Study-class0.730.020.75
TrialDesign-class0.550.060.61
buildNewSqliteDb000
getAssayDataOfStudies0.270.020.29
getDomainCode000
getDomainDataOfStudies0.080.000.07
getListOfAssayTypes000
getListOfDomains000
getListOfStudies0.060.000.07
getStudiesWithSpecificAssayData0.090.000.09
getStudiesWithSpecificDomainData0.080.000.08
getStudy0.690.060.73
loadSerializedStudyData000
mergeDomainAndSupplemental0.390.020.40
serialzeStudyData1.630.031.66
setImmPortDataSource0.050.010.06