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BioC 3.5: INSTALL report for IRanges on tokay2

This page was generated on 2017-10-18 14:18:50 -0400 (Wed, 18 Oct 2017).

Package 685/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IRanges 2.10.5
Bioconductor Package Maintainer
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/IRanges
Branch: RELEASE_3_5
Last Commit: b00d1d5
Last Changed Date: 2017-10-06 22:09:38 -0400 (Fri, 06 Oct 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ ERROR ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  ERROR  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: IRanges
Version: 2.10.5
Command: rm -rf IRanges.buildbin-libdir && mkdir IRanges.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/IRanges_2.10.5.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=IRanges.buildbin-libdir --merge-multiarch IRanges_2.10.5.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL IRanges_2.10.5.zip && rm IRanges_2.10.5.tar.gz IRanges_2.10.5.zip
StartedAt: 2017-10-17 18:12:07 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:12:15 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 7.9 seconds
RetCode: 1
Status:  ERROR  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf IRanges.buildbin-libdir && mkdir IRanges.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/IRanges_2.10.5.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=IRanges.buildbin-libdir --merge-multiarch IRanges_2.10.5.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL IRanges_2.10.5.zip  && rm IRanges_2.10.5.tar.gz IRanges_2.10.5.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  590k  100  590k    0     0  11.0M      0 --:--:-- --:--:-- --:--:-- 11.3M

install for i386

* installing *source* package 'IRanges' ...
** libs
C:\Rtools\mingw_32\bin\nm.exe: CompressedAtomicList_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: CompressedIRangesList_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: CompressedList_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: Grouping_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: IRanges_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: IRanges_constructor.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: NCList.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: R_init_IRanges.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: Ranges_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: Ranges_comparison.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: RleViews_utils.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: S4Vectors_stubs.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: SimpleRangesList_class.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: coverage_methods.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: inter_range_methods.o: File format not recognized
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o IRanges.dll tmp.def CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o Ranges_comparison.o RleViews_utils.o S4Vectors_stubs.o SimpleRangesList_class.o coverage_methods.o inter_range_methods.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
CompressedAtomicList_utils.o: file not recognized: File format not recognized
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'IRanges'
* removing 'C:/Users/biocbuild/bbs-3.5-bioc/meat/IRanges.buildbin-libdir/IRanges'
Warning: running command 'C:/Users/biocbuild/bbs-3.5-bioc/R/bin/i386/Rcmd.exe INSTALL --library=IRanges.buildbin-libdir IRanges_2.10.5.tar.gz --no-multiarch' had status 1