HelloRanges 1.2.0
Michael Lawrence
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/HelloRanges | | Branch: RELEASE_3_5 | | Last Commit: 0da6ec3 | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd HelloRanges.buildbin-libdir/HelloRanges && zip -r ../../HelloRanges_1.2.0.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: DESCRIPTION (264 bytes security) (deflated 44%)
adding: doc/ (304 bytes security) (stored 0%)
adding: doc/index.html (264 bytes security) (deflated 59%)
adding: doc/tutorial.pdf (264 bytes security) (deflated 13%)
adding: doc/tutorial.R (264 bytes security) (deflated 83%)
adding: doc/tutorial.Rnw (264 bytes security) (deflated 64%)
adding: help/ (304 bytes security) (stored 0%)
adding: help/aliases.rds (264 bytes security) (stored 0%)
adding: help/AnIndex (264 bytes security) (deflated 82%)
adding: help/HelloRanges.rdb (264 bytes security) (deflated 1%)
adding: help/HelloRanges.rdx (264 bytes security) (stored 0%)
adding: help/paths.rds (264 bytes security) (stored 0%)
adding: html/ (304 bytes security) (stored 0%)
adding: html/00Index.html (264 bytes security) (deflated 86%)
adding: html/R.css (264 bytes security) (deflated 75%)
adding: INDEX (264 bytes security) (deflated 71%)
adding: MD5 (264 bytes security) (deflated 58%)
adding: Meta/ (304 bytes security) (stored 0%)
adding: Meta/features.rds (264 bytes security) (stored 0%)
adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
adding: Meta/links.rds (264 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
adding: Meta/package.rds (264 bytes security) (stored 0%)
adding: Meta/Rd.rds (264 bytes security) (stored 0%)
adding: Meta/vignette.rds (264 bytes security) (stored 0%)
adding: NAMESPACE (264 bytes security) (deflated 48%)
adding: NEWS (264 bytes security) (deflated 29%)
adding: R/ (304 bytes security) (stored 0%)
adding: R/HelloRanges (264 bytes security) (deflated 41%)
adding: R/HelloRanges.rdb (264 bytes security) (deflated 15%)
adding: R/HelloRanges.rdx (264 bytes security) (stored 0%)
adding: unitTests/ (304 bytes security) (stored 0%)
adding: unitTests/data/ (304 bytes security) (stored 0%)
adding: unitTests/data/closest/ (304 bytes security) (stored 0%)
adding: unitTests/data/closest/a.bed (264 bytes security) (stored 0%)
adding: unitTests/data/closest/b.bed (264 bytes security) (stored 0%)
adding: unitTests/data/closest/close-a.bed (264 bytes security) (deflated 33%)
adding: unitTests/data/closest/close-b.bed (264 bytes security) (deflated 16%)
adding: unitTests/data/closest/d.bed (264 bytes security) (stored 0%)
adding: unitTests/data/closest/d_id.bed (264 bytes security) (deflated 8%)
adding: unitTests/data/closest/d_iu.bed (264 bytes security) (deflated 4%)
adding: unitTests/data/closest/mdb1.bed (264 bytes security) (deflated 21%)
adding: unitTests/data/closest/mdb2.bed (264 bytes security) (deflated 22%)
adding: unitTests/data/closest/mdb3.bed (264 bytes security) (stored 0%)
adding: unitTests/data/closest/mq1.bed (264 bytes security) (stored 0%)
adding: unitTests/data/closest/strand-test-a.bed (264 bytes security) (deflated 5%)
adding: unitTests/data/closest/strand-test-b.bed (264 bytes security) (stored 0%)
adding: unitTests/data/coverage/ (304 bytes security) (stored 0%)
adding: unitTests/data/coverage/a.bed (264 bytes security) (deflated 41%)
adding: unitTests/data/coverage/b.bed (264 bytes security) (deflated 63%)
adding: unitTests/data/coverage/test.genome (264 bytes security) (deflated 11%)
adding: unitTests/data/flank/ (304 bytes security) (stored 0%)
adding: unitTests/data/flank/a.bed (264 bytes security) (deflated 30%)
adding: unitTests/data/flank/tiny.genome (264 bytes security) (stored 0%)
adding: unitTests/data/genomecov/ (304 bytes security) (stored 0%)
adding: unitTests/data/genomecov/chip.bam (264 bytes security) (deflated 9%)
adding: unitTests/data/genomecov/chip.bam.bai (264 bytes security) (deflated 59%)
adding: unitTests/data/genomecov/chip.sam (264 bytes security) (deflated 61%)
adding: unitTests/data/genomecov/pair-chip.bam (264 bytes security) (deflated 5%)
adding: unitTests/data/genomecov/pair-chip.bam.bai (264 bytes security) (deflated 59%)
adding: unitTests/data/genomecov/pair-chip.sam (264 bytes security) (deflated 50%)
adding: unitTests/data/genomecov/sam-w-del.bam (264 bytes security) (deflated 14%)
adding: unitTests/data/genomecov/sam-w-del.bam.bai (264 bytes security) (deflated 59%)
adding: unitTests/data/genomecov/sam-w-del.sam (264 bytes security) (deflated 13%)
adding: unitTests/data/genomecov/test.genome (264 bytes security) (deflated 28%)
adding: unitTests/data/genomecov/three_blocks.bam (264 bytes security) (deflated 12%)
adding: unitTests/data/genomecov/three_blocks.bam.bai (264 bytes security) (deflated 59%)
adding: unitTests/data/genomecov/three_blocks.sam (264 bytes security) (deflated 20%)
adding: unitTests/data/genomecov/y.bam (264 bytes security) (deflated 5%)
adding: unitTests/data/genomecov/y.bed (264 bytes security) (deflated 3%)
adding: unitTests/data/getfasta/ (304 bytes security) (stored 0%)
adding: unitTests/data/getfasta/blocks.bed (264 bytes security) (deflated 38%)
adding: unitTests/data/getfasta/t.fa (264 bytes security) (deflated 67%)
adding: unitTests/data/groupby/ (304 bytes security) (stored 0%)
adding: unitTests/data/groupby/a_vcfSVtest.vcf (264 bytes security) (deflated 57%)
adding: unitTests/data/groupby/a_vcfSVtest.vcf.bgz (264 bytes security) (stored 0%)
adding: unitTests/data/groupby/a_vcfSVtest.vcf.bgz.tbi (264 bytes security) (deflated 18%)
adding: unitTests/data/groupby/values3.header.bed (264 bytes security) (deflated 57%)
adding: unitTests/data/intersect/ (304 bytes security) (stored 0%)
adding: unitTests/data/intersect/a.bed (264 bytes security) (deflated 18%)
adding: unitTests/data/intersect/b.bed (264 bytes security) (deflated 26%)
adding: unitTests/data/intersect/c.bed (264 bytes security) (stored 0%)
adding: unitTests/data/intersect/d.bed (264 bytes security) (stored 0%)
adding: unitTests/data/intersect/one_block.bam (264 bytes security) (deflated 14%)
adding: unitTests/data/intersect/one_block.bam.bai (264 bytes security) (deflated 59%)
adding: unitTests/data/intersect/one_block.sam (264 bytes security) (deflated 14%)
adding: unitTests/data/intersect/three_blocks.bam (264 bytes security) (deflated 11%)
adding: unitTests/data/intersect/three_blocks.bam.bai (264 bytes security) (deflated 59%)
adding: unitTests/data/intersect/three_blocks.sam (264 bytes security) (deflated 18%)
adding: unitTests/data/intersect/three_blocks_match.bed (264 bytes security) (deflated 13%)
adding: unitTests/data/intersect/three_blocks_match_1bp.bed (264 bytes security) (deflated 8%)
adding: unitTests/data/intersect/three_blocks_nomatch.bed (264 bytes security) (deflated 13%)
adding: unitTests/data/intersect/two_blocks.bam (264 bytes security) (deflated 12%)
adding: unitTests/data/intersect/two_blocks.bam.bai (264 bytes security) (deflated 59%)
adding: unitTests/data/intersect/two_blocks.sam (264 bytes security) (deflated 15%)
adding: unitTests/data/intersect/x.bed (264 bytes security) (deflated 19%)
adding: unitTests/data/intersect/y.bed (264 bytes security) (deflated 21%)
adding: unitTests/data/jaccard/ (304 bytes security) (stored 0%)
adding: unitTests/data/jaccard/a.bam (264 bytes security) (stored 0%)
adding: unitTests/data/jaccard/a.bed (264 bytes security) (deflated 15%)
adding: unitTests/data/jaccard/aMixedStrands.bed (264 bytes security) (deflated 47%)
adding: unitTests/data/jaccard/bMixedStrands.bed (264 bytes security) (deflated 30%)
adding: unitTests/data/jaccard/e.bed (264 bytes security) (stored 0%)
adding: unitTests/data/jaccard/three_blocks_match.bam (264 bytes security) (stored 0%)
adding: unitTests/data/jaccard/three_blocks_match.bed (264 bytes security) (deflated 13%)
adding: unitTests/data/makewindows/ (304 bytes security) (stored 0%)
adding: unitTests/data/makewindows/input.bed (264 bytes security) (deflated 31%)
adding: unitTests/data/makewindows/test.genome (264 bytes security) (deflated 11%)
adding: unitTests/data/map/ (304 bytes security) (stored 0%)
adding: unitTests/data/map/ivls.bed (264 bytes security) (deflated 51%)
adding: unitTests/data/map/ivls2.bed (264 bytes security) (deflated 18%)
adding: unitTests/data/map/test.gff2 (264 bytes security) (deflated 74%)
adding: unitTests/data/map/values.bed (264 bytes security) (deflated 51%)
adding: unitTests/data/map/values5.bed (264 bytes security) (deflated 45%)
adding: unitTests/data/merge/ (304 bytes security) (stored 0%)
adding: unitTests/data/merge/a.bed (264 bytes security) (deflated 29%)
adding: unitTests/data/merge/a.full.bed (264 bytes security) (deflated 49%)
adding: unitTests/data/merge/a.names.bed (264 bytes security) (deflated 28%)
adding: unitTests/data/merge/fullFields.bam (264 bytes security) (stored 0%)
adding: unitTests/data/merge/testA.vcf (264 bytes security) (deflated 72%)
adding: unitTests/data/merge/testA.vcf.bgz (264 bytes security) (stored 0%)
adding: unitTests/data/merge/testA.vcf.bgz.tbi (264 bytes security) (deflated 12%)
adding: unitTests/data/multiinter/ (304 bytes security) (stored 0%)
adding: unitTests/data/multiinter/a.bed (264 bytes security) (deflated 29%)
adding: unitTests/data/multiinter/b.bed (264 bytes security) (deflated 15%)
adding: unitTests/data/multiinter/c.bed (264 bytes security) (deflated 26%)
adding: unitTests/data/multiinter/test.genome (264 bytes security) (stored 0%)
adding: unitTests/data/nuc/ (304 bytes security) (stored 0%)
adding: unitTests/data/nuc/a.bed (264 bytes security) (deflated 5%)
adding: unitTests/data/nuc/test.fasta (264 bytes security) (deflated 38%)
adding: unitTests/data/shift/ (304 bytes security) (stored 0%)
adding: unitTests/data/shift/a.bed (264 bytes security) (deflated 30%)
adding: unitTests/data/shift/tiny.genome (264 bytes security) (stored 0%)
adding: unitTests/data/slop/ (304 bytes security) (stored 0%)
adding: unitTests/data/slop/a.bed (264 bytes security) (deflated 30%)
adding: unitTests/data/slop/tiny.genome (264 bytes security) (stored 0%)
adding: unitTests/data/subtract/ (304 bytes security) (stored 0%)
adding: unitTests/data/subtract/a.bed (264 bytes security) (deflated 8%)
adding: unitTests/data/subtract/b.bed (264 bytes security) (deflated 6%)
adding: unitTests/data/subtract/c.bed (264 bytes security) (stored 0%)
adding: unitTests/data/subtract/d.bed (264 bytes security) (deflated 26%)
adding: unitTests/data/unionbedg/ (304 bytes security) (stored 0%)
adding: unitTests/data/unionbedg/a.bedGraph (264 bytes security) (deflated 38%)
adding: unitTests/data/unionbedg/b.bedGraph (264 bytes security) (deflated 26%)
adding: unitTests/data/unionbedg/c.bedGraph (264 bytes security) (deflated 30%)
adding: unitTests/data/unionbedg/test.genome (264 bytes security) (stored 0%)
adding: unitTests/test_closest.R (264 bytes security) (deflated 79%)
adding: unitTests/test_coverage.R (264 bytes security) (deflated 73%)
adding: unitTests/test_flank.R (264 bytes security) (deflated 69%)
adding: unitTests/test_genomecov.R (264 bytes security) (deflated 75%)
adding: unitTests/test_getfasta.R (264 bytes security) (deflated 64%)
adding: unitTests/test_groupby.R (264 bytes security) (deflated 55%)
adding: unitTests/test_intersect.R (264 bytes security) (deflated 80%)
adding: unitTests/test_jaccard.R (264 bytes security) (deflated 74%)
adding: unitTests/test_makewindows.R (264 bytes security) (deflated 66%)
adding: unitTests/test_map.R (264 bytes security) (deflated 71%)
adding: unitTests/test_merge.R (264 bytes security) (deflated 79%)
adding: unitTests/test_multiinter.R (264 bytes security) (deflated 63%)
adding: unitTests/test_nuc.R (264 bytes security) (deflated 53%)
adding: unitTests/test_shift.R (264 bytes security) (deflated 68%)
adding: unitTests/test_slop.R (264 bytes security) (deflated 70%)
adding: unitTests/test_subtract.R (264 bytes security) (deflated 72%)
adding: unitTests/test_unionbedg.R (264 bytes security) (deflated 63%)