Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: BUILD BIN report for GenomicFeatures on tokay2

This page was generated on 2017-10-18 14:20:31 -0400 (Wed, 18 Oct 2017).

Package 539/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicFeatures 1.28.5
Bioconductor Package Maintainer
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/GenomicFeatures
Branch: RELEASE_3_5
Last Commit: ba92381
Last Changed Date: 2017-09-19 02:07:55 -0400 (Tue, 19 Sep 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  TIMEOUT [ OK ]
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomicFeatures
Version: 1.28.5
Command: cd GenomicFeatures.buildbin-libdir/GenomicFeatures && zip -r ../../GenomicFeatures_1.28.5.zip . & cd ../..
StartedAt: 2017-10-18 04:38:04 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 04:38:44 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 40.3 seconds
RetCode: 0
Status:  OK  
PackageFile: GenomicFeatures_1.28.5.zip
PackageFileSize: 2.312 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd GenomicFeatures.buildbin-libdir/GenomicFeatures && zip -r ../../GenomicFeatures_1.28.5.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (264 bytes security) (deflated 56%)
  adding: DESCRIPTION (264 bytes security) (deflated 52%)
  adding: doc/ (304 bytes security) (stored 0%)
  adding: doc/GenomicFeatures.pdf (264 bytes security) (deflated 11%)
  adding: doc/GenomicFeatures.R (264 bytes security) (deflated 77%)
  adding: doc/GenomicFeatures.Rnw (264 bytes security) (deflated 65%)
  adding: doc/index.html (264 bytes security) (deflated 59%)
  adding: extdata/ (304 bytes security) (stored 0%)
  adding: extdata/Biomart_Ensembl_sample.sqlite (264 bytes security) (deflated 78%)
  adding: extdata/cD.exByEdge-SG-Vig.Rda (264 bytes security) (deflated 1%)
  adding: extdata/cD.exsByGenes-SG-Vig.Rda (264 bytes security) (deflated 2%)
  adding: extdata/events.Rda (264 bytes security) (stored 0%)
  adding: extdata/FeatureDb.sqlite (264 bytes security) (deflated 62%)
  adding: extdata/GFF3_files/ (304 bytes security) (stored 0%)
  adding: extdata/GFF3_files/a.gff3 (264 bytes security) (deflated 88%)
  adding: extdata/GFF3_files/a.sqlite (264 bytes security) (deflated 69%)
  adding: extdata/GFF3_files/dmel-1000-r5.11.filtered.gff (264 bytes security) (deflated 88%)
  adding: extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite (264 bytes security) (deflated 67%)
  adding: extdata/GFF3_files/NC_011025.gff (264 bytes security) (deflated 81%)
  adding: extdata/GFF3_files/TheCanonicalGene_v1.gff3 (264 bytes security) (deflated 81%)
  adding: extdata/GFF3_files/TheCanonicalGene_v2.gff3 (264 bytes security) (deflated 80%)
  adding: extdata/GTF_files/ (304 bytes security) (stored 0%)
  adding: extdata/GTF_files/Aedes_aegypti.partial.gtf (264 bytes security) (deflated 92%)
  adding: extdata/GTF_files/Aedes_aegypti.partial.sqlite (264 bytes security) (deflated 72%)
  adding: extdata/GTF_files/test1.gtf (264 bytes security) (deflated 80%)
  adding: extdata/hg19_knownGene_sample.rda (264 bytes security) (stored 0%)
  adding: extdata/hg19_knownGene_sample.sqlite (264 bytes security) (deflated 61%)
  adding: extdata/hg19_knownToLocusLink_sample.rda (264 bytes security) (stored 0%)
  adding: extdata/sample_ranges.rds (264 bytes security) (stored 0%)
  adding: help/ (304 bytes security) (stored 0%)
  adding: help/aliases.rds (264 bytes security) (stored 0%)
  adding: help/AnIndex (264 bytes security) (deflated 82%)
  adding: help/GenomicFeatures.rdb (264 bytes security) (deflated 1%)
  adding: help/GenomicFeatures.rdx (264 bytes security) (stored 0%)
  adding: help/paths.rds (264 bytes security) (stored 0%)
  adding: html/ (304 bytes security) (stored 0%)
  adding: html/00Index.html (264 bytes security) (deflated 87%)
  adding: html/R.css (264 bytes security) (deflated 75%)
  adding: INDEX (264 bytes security) (deflated 69%)
  adding: MD5 (264 bytes security) (deflated 50%)
  adding: Meta/ (304 bytes security) (stored 0%)
  adding: Meta/features.rds (264 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
  adding: Meta/links.rds (264 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
  adding: Meta/package.rds (264 bytes security) (stored 0%)
  adding: Meta/Rd.rds (264 bytes security) (stored 0%)
  adding: Meta/vignette.rds (264 bytes security) (stored 0%)
  adding: NAMESPACE (264 bytes security) (deflated 69%)
  adding: NEWS (264 bytes security) (deflated 67%)
  adding: R/ (304 bytes security) (stored 0%)
  adding: R/GenomicFeatures (264 bytes security) (deflated 41%)
  adding: R/GenomicFeatures.rdb (264 bytes security) (deflated 25%)
  adding: R/GenomicFeatures.rdx (264 bytes security) (deflated 0%)
  adding: script/ (304 bytes security) (stored 0%)
  adding: script/maketRNAFDb.R (264 bytes security) (deflated 71%)
  adding: script/makeTxDbs.R (264 bytes security) (deflated 76%)
  adding: txdb-template/ (304 bytes security) (stored 0%)
  adding: txdb-template/DESCRIPTION (264 bytes security) (deflated 34%)
  adding: txdb-template/man/ (304 bytes security) (stored 0%)
  adding: txdb-template/man/package.Rd (264 bytes security) (deflated 47%)
  adding: txdb-template/NAMESPACE (264 bytes security) (deflated 21%)
  adding: txdb-template/R/ (304 bytes security) (stored 0%)
  adding: txdb-template/R/zzz.R (264 bytes security) (deflated 46%)
  adding: unitTests/ (304 bytes security) (stored 0%)
  adding: unitTests/test_coordinate-mapping-methods.R (264 bytes security) (deflated 83%)
  adding: unitTests/test_disjointExons.R (264 bytes security) (deflated 57%)
  adding: unitTests/test_getPromoterSeq-methods.R (264 bytes security) (deflated 73%)
  adding: unitTests/test_makeIdsForUniqueDataFrameRows.R (264 bytes security) (deflated 53%)
  adding: unitTests/test_makeTxDb.R (264 bytes security) (deflated 76%)
  adding: unitTests/test_makeTxDbFromBiomart.R (264 bytes security) (deflated 66%)
  adding: unitTests/test_makeTxDbFromGFF.R (264 bytes security) (deflated 67%)
  adding: unitTests/test_makeTxDbFromGRanges.R (264 bytes security) (deflated 84%)
  adding: unitTests/test_makeTxDbFromUCSC.R (264 bytes security) (deflated 74%)
  adding: unitTests/test_mapIdsToRanges.R (264 bytes security) (deflated 75%)
  adding: unitTests/test_select-methods.R (264 bytes security) (deflated 80%)
  adding: unitTests/test_transcripts.R (264 bytes security) (deflated 82%)
  adding: unitTests/test_transcriptsBy.R (264 bytes security) (deflated 81%)
  adding: unitTests/test_transcriptsByOverlaps.R (264 bytes security) (deflated 81%)
  adding: unitTests/test_TxDb_seqinfo.R (264 bytes security) (deflated 75%)