BioC 3.5: CHECK report for EnrichedHeatmap on tokay2

Package: EnrichedHeatmap

Version: 1.6.0

Command: rm -rf EnrichedHeatmap.buildbin-libdir EnrichedHeatmap.Rcheck && mkdir EnrichedHeatmap.buildbin-libdir EnrichedHeatmap.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.6.0.tar.gz >EnrichedHeatmap.Rcheck\00install.out 2>&1 && cp EnrichedHeatmap.Rcheck\00install.out EnrichedHeatmap-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=EnrichedHeatmap.buildbin-libdir --install="check:EnrichedHeatmap-install.out" --force-multiarch --no-vignettes --timings EnrichedHeatmap_1.6.0.tar.gz

StartedAt: 2017-10-17 23:34:22 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-17 23:38:24 -0400 (Tue, 17 Oct 2017)

EllapsedTime: 242.4 seconds

RetCode: 0

Status:  OK

CheckDir: EnrichedHeatmap.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf EnrichedHeatmap.buildbin-libdir EnrichedHeatmap.Rcheck && mkdir EnrichedHeatmap.buildbin-libdir EnrichedHeatmap.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.6.0.tar.gz >EnrichedHeatmap.Rcheck\00install.out 2>&1 && cp EnrichedHeatmap.Rcheck\00install.out EnrichedHeatmap-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=EnrichedHeatmap.buildbin-libdir --install="check:EnrichedHeatmap-install.out" --force-multiarch --no-vignettes --timings EnrichedHeatmap_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/EnrichedHeatmap.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EnrichedHeatmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EnrichedHeatmap' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EnrichedHeatmap' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc       2.3Mb
    extdata   2.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
EnrichedHeatmap 14.23    0.2   14.44
anno_enriched    5.78    0.2    5.99
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
EnrichedHeatmap 11.42   0.14   11.56
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R'
 OK
** running tests for arch 'x64' ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/EnrichedHeatmap.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'EnrichedHeatmap' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'EnrichedHeatmap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EnrichedHeatmap' as EnrichedHeatmap_1.6.0.zip
* DONE (EnrichedHeatmap)

name	user	system	elapsed
EnrichedHeatmap-class	0	0	0
EnrichedHeatmap	14.23	0.20	14.44
EnrichedHeatmapList-class	0	0	0
EnrichedHeatmapList	0	0	0
Extract.normalizedMatrix	0	0	0
add.AdditiveUnit	0	0	0
anno_enriched	5.78	0.20	5.99
copyAttr	0	0	0
default_smooth_fun	0	0	0
draw-EnrichedHeatmap-method	0	0	0
draw-EnrichedHeatmapList-method	0	0	0
draw-dispatch	0	0	0
enriched_score	0	0	0
getSignalsFromList	0	0	0
makeWindows	0.30	0.02	0.31
normalizeToMatrix	2.76	0.00	2.77
print.normalizedMatrix	0	0	0
show-EnrichedHeatmap-method	0	0	0
show-EnrichedHeatmapList-method	0	0	0
show-dispatch	0	0	0

name	user	system	elapsed
EnrichedHeatmap-class	0	0	0
EnrichedHeatmap	11.42	0.14	11.56
EnrichedHeatmapList-class	0	0	0
EnrichedHeatmapList	0	0	0
Extract.normalizedMatrix	0	0	0
add.AdditiveUnit	0	0	0
anno_enriched	4.81	0.08	4.89
copyAttr	0	0	0
default_smooth_fun	0	0	0
draw-EnrichedHeatmap-method	0	0	0
draw-EnrichedHeatmapList-method	0	0	0
draw-dispatch	0	0	0
enriched_score	0	0	0
getSignalsFromList	0	0	0
makeWindows	0.34	0.00	0.34
normalizeToMatrix	3.03	0.00	3.03
print.normalizedMatrix	0	0	0
show-EnrichedHeatmap-method	0	0	0
show-EnrichedHeatmapList-method	0	0	0
show-dispatch	0	0	0