Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for CORREP on tokay2

This page was generated on 2017-10-18 14:19:40 -0400 (Wed, 18 Oct 2017).

Package 283/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CORREP 1.42.0
Dongxiao Zhu
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/CORREP
Branch: RELEASE_3_5
Last Commit: af29491
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CORREP
Version: 1.42.0
Command: rm -rf CORREP.buildbin-libdir CORREP.Rcheck && mkdir CORREP.buildbin-libdir CORREP.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CORREP.buildbin-libdir CORREP_1.42.0.tar.gz >CORREP.Rcheck\00install.out 2>&1 && cp CORREP.Rcheck\00install.out CORREP-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=CORREP.buildbin-libdir --install="check:CORREP-install.out" --force-multiarch --no-vignettes --timings CORREP_1.42.0.tar.gz
StartedAt: 2017-10-17 23:02:32 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 23:03:24 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 51.8 seconds
RetCode: 0
Status:  OK  
CheckDir: CORREP.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CORREP.buildbin-libdir CORREP.Rcheck && mkdir CORREP.buildbin-libdir CORREP.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CORREP.buildbin-libdir CORREP_1.42.0.tar.gz >CORREP.Rcheck\00install.out 2>&1 && cp CORREP.Rcheck\00install.out CORREP-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=CORREP.buildbin-libdir --install="check:CORREP-install.out" --force-multiarch --no-vignettes --timings CORREP_1.42.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/CORREP.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CORREP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CORREP' version '1.42.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CORREP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: CORREP-package.Rd:37-38: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
permutest 8.49   0.02     8.5
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
permutest 9.26      0    9.27
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/CORREP.Rcheck/00check.log'
for details.


CORREP.Rcheck/00install.out:


install for i386

* installing *source* package 'CORREP' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'CORREP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CORREP' as CORREP_1.42.0.zip
* DONE (CORREP)

CORREP.Rcheck/examples_i386/CORREP-Ex.timings:

nameusersystemelapsed
cor.LRtest0.050.000.05
cor.LRtest.std0.010.000.02
cor.balance0.110.000.11
cor.bootci1.120.001.12
cor.unbalance000
gal_all0.000.010.02
permutest8.490.028.50
true.member000

CORREP.Rcheck/examples_x64/CORREP-Ex.timings:

nameusersystemelapsed
cor.LRtest0.050.010.07
cor.LRtest.std0.010.000.02
cor.balance0.080.000.08
cor.bootci0.980.000.99
cor.unbalance000
gal_all0.020.000.01
permutest9.260.009.27
true.member000