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BioC 3.5: CHECK report for spkTools on tokay2

This page was generated on 2017-10-18 14:20:18 -0400 (Wed, 18 Oct 2017).

Package 1254/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spkTools 1.32.0
Matthew N McCall
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/spkTools
Branch: RELEASE_3_5
Last Commit: 153166b
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: spkTools
Version: 1.32.0
Command: rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.32.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.32.0.tar.gz
StartedAt: 2017-10-18 03:12:10 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 03:14:50 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 159.9 seconds
RetCode: 0
Status:  OK  
CheckDir: spkTools.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.32.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.32.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/spkTools.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'spkTools/DESCRIPTION' ... OK
* this is package 'spkTools' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'spkTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
spkAll   22.45   0.06   22.56
spkTools 22.23   0.12   22.36
spkGNN    7.98   0.00    7.99
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
spkTools 13.98   0.18   14.17
spkAll   13.78   0.02   13.81
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/spkTools.Rcheck/00check.log'
for details.


spkTools.Rcheck/00install.out:


install for i386

* installing *source* package 'spkTools' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'spkTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'spkTools' as spkTools_1.32.0.zip
* DONE (spkTools)

spkTools.Rcheck/examples_i386/spkTools-Ex.timings:

nameusersystemelapsed
SpikeInExpressSet-class0.390.000.39
plotSpkBox0.660.030.69
spkAccSD1.030.001.03
spkAll22.45 0.0622.56
spkAnova0.090.000.09
spkBal0.10.00.1
spkBox0.790.070.86
spkDensity0.160.030.18
spkGNN7.980.007.99
spkMA1.570.031.59
spkPair0.090.000.10
spkPairNS0.160.000.15
spkPot0.710.020.72
spkQuantile0.070.000.08
spkSlope0.070.000.06
spkTools22.23 0.1222.36
spkVar0.050.000.04
summarySpkBox0.610.000.61

spkTools.Rcheck/examples_x64/spkTools-Ex.timings:

nameusersystemelapsed
SpikeInExpressSet-class0.440.000.44
plotSpkBox0.830.010.84
spkAccSD1.040.001.03
spkAll13.78 0.0213.81
spkAnova0.120.000.12
spkBal0.10.00.1
spkBox0.910.080.99
spkDensity0.150.000.15
spkGNN3.940.033.97
spkMA1.770.031.80
spkPair0.220.000.22
spkPairNS0.090.000.09
spkPot0.890.030.92
spkQuantile0.090.000.10
spkSlope0.100.020.11
spkTools13.98 0.1814.17
spkVar0.100.000.09
summarySpkBox1.180.001.19