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BioC 3.5: BUILD BIN report for Rsamtools on tokay2

This page was generated on 2017-10-18 14:20:42 -0400 (Wed, 18 Oct 2017).

Package 1151/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rsamtools 1.28.0
Bioconductor Package Maintainer
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/Rsamtools
Branch: RELEASE_3_5
Last Commit: dfa5b6a
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Rsamtools
Version: 1.28.0
Command: cd Rsamtools.buildbin-libdir/Rsamtools && zip -r ../../Rsamtools_1.28.0.zip . & cd ../..
StartedAt: 2017-10-18 04:57:01 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 04:57:34 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 32.9 seconds
RetCode: 0
Status:  OK  
PackageFile: Rsamtools_1.28.0.zip
PackageFileSize: 8.376 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd Rsamtools.buildbin-libdir/Rsamtools && zip -r ../../Rsamtools_1.28.0.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: DESCRIPTION (264 bytes security) (deflated 42%)
  adding: doc/ (304 bytes security) (stored 0%)
  adding: doc/index.html (264 bytes security) (deflated 68%)
  adding: doc/Rsamtools-Overview.pdf (264 bytes security) (deflated 13%)
  adding: doc/Rsamtools-Overview.R (264 bytes security) (deflated 76%)
  adding: doc/Rsamtools-Overview.Rnw (264 bytes security) (deflated 62%)
  adding: doc/Rsamtools-UsingCLibraries.pdf (264 bytes security) (deflated 10%)
  adding: doc/Rsamtools-UsingCLibraries.R (264 bytes security) (deflated 48%)
  adding: doc/Rsamtools-UsingCLibraries.Rnw (264 bytes security) (deflated 57%)
  adding: extdata/ (304 bytes security) (stored 0%)
  adding: extdata/ce2dict1.fa (264 bytes security) (deflated 47%)
  adding: extdata/ce2dict1.fa.fai (264 bytes security) (deflated 44%)
  adding: extdata/ex1.bam (264 bytes security) (deflated 0%)
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  adding: extdata/ex1.bcf.bci (264 bytes security) (deflated 26%)
  adding: extdata/ex1.sam (264 bytes security) (deflated 80%)
  adding: extdata/example.gtf.gz (264 bytes security) (stored 0%)
  adding: extdata/example.gtf.gz.tbi (264 bytes security) (deflated 5%)
  adding: extdata/example_from_SAM_Spec.bam (264 bytes security) (deflated 7%)
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  adding: extdata/example_from_SAM_Spec.sam (264 bytes security) (deflated 45%)
  adding: extdata/no_which_buffered_pileup.bam (264 bytes security) (deflated 16%)
  adding: extdata/no_which_buffered_pileup.bam.bai (264 bytes security) (deflated 69%)
  adding: extdata/no_which_buffered_pileup.sam (264 bytes security) (deflated 60%)
  adding: extdata/no_which_whole_file.bam (264 bytes security) (deflated 16%)
  adding: extdata/no_which_whole_file.bam.bai (264 bytes security) (deflated 69%)
  adding: extdata/no_which_whole_file.sam (264 bytes security) (deflated 47%)
  adding: extdata/olaps.Rda (264 bytes security) (deflated 3%)
  adding: extdata/pileup.txt (264 bytes security) (deflated 47%)
  adding: extdata/querybins.bam (264 bytes security) (deflated 18%)
  adding: extdata/querybins.bam.bai (264 bytes security) (deflated 59%)
  adding: extdata/querybins.sam (264 bytes security) (deflated 31%)
  adding: extdata/revbins.bam (264 bytes security) (deflated 5%)
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  adding: extdata/revbins.sam (264 bytes security) (deflated 71%)
  adding: extdata/samtools-github.txt (264 bytes security) (stored 0%)
  adding: extdata/slxMaq09_urls.txt (264 bytes security) (deflated 91%)
  adding: extdata/tagfilter.bam (264 bytes security) (deflated 7%)
  adding: extdata/tagfilter.bam.bai (264 bytes security) (deflated 80%)
  adding: extdata/tagfilter.sam (264 bytes security) (deflated 75%)
  adding: extdata/tiny.bam (264 bytes security) (stored 0%)
  adding: extdata/tiny.bam.bai (264 bytes security) (deflated 85%)
  adding: extdata/tiny.sam (264 bytes security) (deflated 80%)
  adding: extdata/tophat/ (304 bytes security) (stored 0%)
  adding: extdata/tophat/accepted_hits.sam (264 bytes security) (deflated 90%)
  adding: extdata/tophat/coverage.wig (264 bytes security) (deflated 78%)
  adding: extdata/tophat/junctions.bed (264 bytes security) (deflated 34%)
  adding: extdata/tophat/README (264 bytes security) (stored 0%)
  adding: help/ (304 bytes security) (stored 0%)
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  adding: help/AnIndex (264 bytes security) (deflated 84%)
  adding: help/paths.rds (264 bytes security) (stored 0%)
  adding: help/Rsamtools.rdb (264 bytes security) (deflated 1%)
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  adding: html/ (304 bytes security) (stored 0%)
  adding: html/00Index.html (264 bytes security) (deflated 92%)
  adding: html/R.css (264 bytes security) (deflated 75%)
  adding: include/ (412 bytes security) (stored 0%)
  adding: include/samtools/ (412 bytes security) (stored 0%)
  adding: include/samtools/bam.h (264 bytes security) (deflated 70%)
  adding: include/samtools/bam_endian.h (264 bytes security) (deflated 68%)
  adding: include/samtools/bcftools/ (412 bytes security) (stored 0%)
  adding: include/samtools/bcftools/bcf.h (264 bytes security) (deflated 61%)
  adding: include/samtools/bcftools/prob1.h (264 bytes security) (deflated 59%)
  adding: include/samtools/bgzf.h (264 bytes security) (deflated 60%)
  adding: include/samtools/faidx.h (264 bytes security) (deflated 62%)
  adding: include/samtools/kaln.h (264 bytes security) (deflated 49%)
  adding: include/samtools/khash.h (264 bytes security) (deflated 75%)
  adding: include/samtools/knetfile.h (264 bytes security) (deflated 56%)
  adding: include/samtools/kprobaln.h (264 bytes security) (deflated 44%)
  adding: include/samtools/kseq.h (264 bytes security) (deflated 66%)
  adding: include/samtools/ksort.h (264 bytes security) (deflated 67%)
  adding: include/samtools/kstring.h (264 bytes security) (deflated 63%)
  adding: include/samtools/razf.h (264 bytes security) (deflated 53%)
  adding: include/samtools/sam.h (264 bytes security) (deflated 58%)
  adding: include/samtools/sam_header.h (264 bytes security) (deflated 62%)
  adding: include/tabix/ (412 bytes security) (stored 0%)
  adding: include/tabix/bgzf.h (264 bytes security) (deflated 60%)
  adding: include/tabix/knetfile.h (264 bytes security) (deflated 56%)
  adding: include/tabix/kstring.h (264 bytes security) (deflated 63%)
  adding: include/tabix/tabix.h (264 bytes security) (deflated 59%)
  adding: INDEX (264 bytes security) (deflated 66%)
  adding: libs/ (304 bytes security) (stored 0%)
  adding: libs/i386/ (304 bytes security) (stored 0%)
  adding: libs/i386/Rsamtools.dll (264 bytes security) (deflated 62%)
  adding: libs/x64/ (304 bytes security) (stored 0%)
  adding: libs/x64/Rsamtools.dll (264 bytes security) (deflated 62%)
  adding: LICENSE (264 bytes security) (deflated 41%)
  adding: MD5 (264 bytes security) (deflated 53%)
  adding: Meta/ (304 bytes security) (stored 0%)
  adding: Meta/features.rds (264 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
  adding: Meta/links.rds (264 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
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  adding: Meta/Rd.rds (264 bytes security) (stored 0%)
  adding: Meta/vignette.rds (264 bytes security) (stored 0%)
  adding: NAMESPACE (264 bytes security) (deflated 61%)
  adding: NEWS (264 bytes security) (deflated 64%)
  adding: R/ (304 bytes security) (stored 0%)
  adding: R/Rsamtools (264 bytes security) (deflated 41%)
  adding: R/Rsamtools.rdb (264 bytes security) (deflated 37%)
  adding: R/Rsamtools.rdx (264 bytes security) (deflated 3%)
  adding: scripts/ (304 bytes security) (stored 0%)
  adding: scripts/BamViews-1000g.R (264 bytes security) (deflated 53%)
  adding: scripts/features.R (264 bytes security) (deflated 52%)
  adding: scripts/remote_test.R (264 bytes security) (deflated 56%)
  adding: scripts/update-samtools.sh (264 bytes security) (deflated 66%)
  adding: unitTests/ (304 bytes security) (stored 0%)
  adding: unitTests/cases/ (304 bytes security) (stored 0%)
  adding: unitTests/cases/ex1.sam.gz (264 bytes security) (deflated 0%)
  adding: unitTests/cases/ex1_noindex.bam (264 bytes security) (deflated 0%)
  adding: unitTests/cases/ex1_shuf1000.bam (264 bytes security) (deflated 0%)
  adding: unitTests/cases/ex1_shuf1000.bam.bai (264 bytes security) (deflated 56%)
  adding: unitTests/cases/ex1_unsort.bam (264 bytes security) (deflated 0%)
  adding: unitTests/cases/ex1_zero_index.bam.bai (264 bytes security) (stored 0%)
  adding: unitTests/cases/no_header_line.vcf (264 bytes security) (deflated 56%)
  adding: unitTests/cases/no_SAMPLE_header.vcf (264 bytes security) (deflated 49%)
  adding: unitTests/cases/pileup-no-stars.txt (264 bytes security) (deflated 40%)
  adding: unitTests/cases/plp_refskip.bam (264 bytes security) (deflated 12%)
  adding: unitTests/cases/plp_refskip.bam.bai (264 bytes security) (deflated 59%)
  adding: unitTests/test_applyPileups.R (264 bytes security) (deflated 82%)
  adding: unitTests/test_asBam.R (264 bytes security) (deflated 48%)
  adding: unitTests/test_bam.R (264 bytes security) (deflated 77%)
  adding: unitTests/test_BamFile.R (264 bytes security) (deflated 80%)
  adding: unitTests/test_BamViews.R (264 bytes security) (deflated 75%)
  adding: unitTests/test_bam_count.R (264 bytes security) (deflated 69%)
  adding: unitTests/test_bam_header.R (264 bytes security) (deflated 28%)
  adding: unitTests/test_BcfFile.R (264 bytes security) (deflated 69%)
  adding: unitTests/test_compression.R (264 bytes security) (deflated 65%)
  adding: unitTests/test_FaFile.R (264 bytes security) (deflated 73%)
  adding: unitTests/test_mapqfilter.R (264 bytes security) (deflated 61%)
  adding: unitTests/test_phred2ASCIIOffset.R (264 bytes security) (deflated 72%)
  adding: unitTests/test_pileup_nowhich.R (264 bytes security) (deflated 75%)
  adding: unitTests/test_pileup_querybins.R (264 bytes security) (deflated 86%)
  adding: unitTests/test_pileup_revbins.R (264 bytes security) (deflated 87%)
  adding: unitTests/test_pileup_single_range.R (264 bytes security) (deflated 89%)
  adding: unitTests/test_readPileup.R (264 bytes security) (deflated 63%)
  adding: unitTests/test_RsamtoolsFile.R (264 bytes security) (deflated 76%)
  adding: unitTests/test_scanBamFlag.R (264 bytes security) (deflated 43%)
  adding: unitTests/test_sortBam_test.R (264 bytes security) (deflated 55%)
  adding: unitTests/test_TabixFile.R (264 bytes security) (deflated 65%)
  adding: unitTests/test_tagfilter.R (264 bytes security) (deflated 74%)
  adding: unitTests/test_testPairedEndBam.R (264 bytes security) (deflated 31%)
  adding: unitTests/test_utilities.R (264 bytes security) (deflated 51%)
  adding: usretc/ (412 bytes security) (stored 0%)
  adding: usretc/i386/ (412 bytes security) (stored 0%)
  adding: usretc/i386/Rsamtools.mk (264 bytes security) (deflated 58%)
  adding: usretc/x64/ (412 bytes security) (stored 0%)
  adding: usretc/x64/Rsamtools.mk (264 bytes security) (deflated 58%)
  adding: usrlib/ (412 bytes security) (stored 0%)
  adding: usrlib/i386/ (412 bytes security) (stored 0%)
  adding: usrlib/i386/libbam.a (264 bytes security) (deflated 58%)
  adding: usrlib/i386/libbcf.a (264 bytes security) (deflated 59%)
  adding: usrlib/i386/libtabix.a (264 bytes security) (deflated 55%)
  adding: usrlib/x64/ (412 bytes security) (stored 0%)
  adding: usrlib/x64/libbam.a (264 bytes security) (deflated 56%)
  adding: usrlib/x64/libbcf.a (264 bytes security) (deflated 58%)
  adding: usrlib/x64/libtabix.a (264 bytes security) (deflated 54%)