BioC 3.5: CHECK report for trackViewer on malbec2

Package: trackViewer

Version: 1.12.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings trackViewer_1.12.0.tar.gz

StartedAt: 2017-08-16 02:43:19 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 02:48:31 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 312.8 seconds

RetCode: 0

Status:  OK

CheckDir: trackViewer.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings trackViewer_1.12.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/trackViewer.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘trackViewer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘trackViewer’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘trackViewer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
trackViewer-package 16.404  0.004  16.980
viewTracks           9.756  0.000  10.662
geneModelFromTxdb    8.728  0.112   9.330
parseWIG             8.600  0.004   8.616
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘trackViewer’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (trackViewer)

name	user	system	elapsed
GRoperator	1.520	0.012	1.532
addArrowMark	0.008	0.000	0.010
addGuideLine	0.004	0.000	0.005
coverageGR	0.316	0.000	0.317
dandelion.plot	1.476	0.004	1.480
geneModelFromTxdb	8.728	0.112	9.330
getCurTrackViewport	0.076	0.000	0.076
ideogramPlot	0.000	0.000	0.001
importBam	0.628	0.000	0.631
importData	2.092	0.004	2.138
importScore	0.692	0.000	0.691
loadIdeogram	0.000	0.000	0.001
lolliplot	0.860	0.004	0.863
optimizeStyle	0.628	0.000	0.628
parse2GRanges	0.008	0.000	0.008
parseWIG	8.600	0.004	8.616
plotGRanges	1.208	0.000	1.211
track	0.036	0.000	0.037
trackViewer-package	16.404	0.004	16.980
trackViewerStyle	0.000	0.000	0.001
viewTracks	9.756	0.000	10.662