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BioC 3.5: INSTALL report for destiny on malbec2

This page was generated on 2017-08-16 13:16:51 -0400 (Wed, 16 Aug 2017).

Package 340/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
destiny 2.4.4
Philipp Angerer
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/destiny
Last Changed Rev: 131284 / Revision: 131943
Last Changed Date: 2017-07-17 10:40:13 -0400 (Mon, 17 Jul 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 [ ERROR ] ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  ERROR  ERROR  skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: destiny
Version: 2.4.4
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL destiny
StartedAt: 2017-08-15 18:11:45 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:12:40 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 55.2 seconds
RetCode: 1
Status:  ERROR 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL destiny
###
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* installing to library ‘/home/biocbuild/bbs-3.5-bioc/R/library’
* installing *source* package ‘destiny’ ...
** libs
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG  -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/RcppEigen/include" -I/usr/local/include  -ggdb -fpic  -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG  -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/RcppEigen/include" -I/usr/local/include  -ggdb -fpic  -g -O2 -c censoring.cpp -o censoring.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG  -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/RcppEigen/include" -I/usr/local/include  -ggdb -fpic  -g -O2 -c no_censoring.cpp -o no_censoring.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o destiny.so RcppExports.o censoring.o no_censoring.o -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.5-bioc/R/library/destiny/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘DPT.ipynbmeta’ using ‘UTF-8’ 
Error in nbconvert(file, "script", ...) : 
  The call “'jupyter' 'nbconvert' '--to' 'script' 'DPT.ipynb'” failed with exit status 255
ERROR: installing vignettes failed
* removing ‘/home/biocbuild/bbs-3.5-bioc/R/library/destiny’
* restoring previous ‘/home/biocbuild/bbs-3.5-bioc/R/library/destiny’