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BioC 3.5: INSTALL report for VanillaICE on tokay2

This page was generated on 2017-08-16 13:19:44 -0400 (Wed, 16 Aug 2017).

Package 1354/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VanillaICE 1.38.0
Robert Scharpf
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/VanillaICE
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: VanillaICE
Version: 1.38.0
Command: rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/VanillaICE_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=VanillaICE.buildbin-libdir --merge-multiarch VanillaICE_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL VanillaICE_1.38.0.zip && rm VanillaICE_1.38.0.tar.gz VanillaICE_1.38.0.zip
StartedAt: 2017-08-15 18:36:33 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:38:07 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 94.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/VanillaICE_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=VanillaICE.buildbin-libdir --merge-multiarch VanillaICE_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL VanillaICE_1.38.0.zip  && rm VanillaICE_1.38.0.tar.gz VanillaICE_1.38.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1094k  100 1094k    0     0  44.5M      0 --:--:-- --:--:-- --:--:-- 46.4M

install for i386

* installing *source* package 'VanillaICE' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rinit.c -o rinit.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c viterbi.c -o viterbi.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/i386
** R
** data
** inst
** preparing package for lazy loading
No methods found in "RSQLite" for requests: dbGetQuery
Creating a new generic function for 'distance' in package 'VanillaICE'
** help
*** installing help indices
** building package indices
** installing vignettes
   'VanillaICE.Rnw' 
   'crlmmDownstream.Rnw' 
** testing if installed package can be loaded
No methods found in "RSQLite" for requests: dbGetQuery

install for x64

* installing *source* package 'VanillaICE' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rinit.c -o rinit.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c viterbi.c -o viterbi.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/x64
** testing if installed package can be loaded
No methods found in "RSQLite" for requests: dbGetQuery
* MD5 sums
packaged installation of 'VanillaICE' as VanillaICE_1.38.0.zip
* DONE (VanillaICE)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'VanillaICE' successfully unpacked and MD5 sums checked