Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for ASpli on tokay2

This page was generated on 2017-08-16 13:26:03 -0400 (Wed, 16 Aug 2017).

Package 71/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ASpli 1.2.3
Estefania Mancini , Javier Iserte
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/ASpli
Last Changed Rev: 131897 / Revision: 131943
Last Changed Date: 2017-08-11 09:12:05 -0400 (Fri, 11 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ASpli
Version: 1.2.3
Command: rm -rf ASpli.buildbin-libdir ASpli.Rcheck && mkdir ASpli.buildbin-libdir ASpli.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ASpli.buildbin-libdir ASpli_1.2.3.tar.gz >ASpli.Rcheck\00install.out 2>&1 && cp ASpli.Rcheck\00install.out ASpli-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=ASpli.buildbin-libdir --install="check:ASpli-install.out" --force-multiarch --no-vignettes --timings ASpli_1.2.3.tar.gz
StartedAt: 2017-08-15 22:04:03 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 22:31:40 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 1656.9 seconds
RetCode: 0
Status:  OK  
CheckDir: ASpli.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ASpli.buildbin-libdir ASpli.Rcheck && mkdir ASpli.buildbin-libdir ASpli.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ASpli.buildbin-libdir ASpli_1.2.3.tar.gz >ASpli.Rcheck\00install.out 2>&1 && cp ASpli.Rcheck\00install.out ASpli-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=ASpli.buildbin-libdir --install="check:ASpli-install.out" --force-multiarch --no-vignettes --timings ASpli_1.2.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/ASpli.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpli/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpli' version '1.2.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpli' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
DUreport_DEXSeq    104.50   3.73  108.38
ASpli-package       79.10   6.24   85.32
AsDiscover-methods  70.03   3.71   73.75
plotTopTags         53.45   1.23   54.69
DUreport            51.31   2.88   54.18
acc_AS              48.62   1.82   50.44
readCounts          47.58   0.78   48.36
acc_counts          41.45   1.92   43.38
acc_DU              41.82   1.26   43.08
loadBAM             10.39   0.28   10.67
binGenome            7.88   0.06    7.94
acc_features         7.72   0.02    7.73
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
DUreport_DEXSeq    107.66   3.48  111.17
ASpli-package       82.81   6.07   88.87
AsDiscover-methods  75.77   3.86   79.64
acc_AS              64.59   2.43   67.17
plotTopTags         60.00   1.81   61.81
readCounts          57.14   1.93   59.08
DUreport            51.63   3.23   54.86
acc_DU              50.37   1.65   52.03
acc_counts          45.79   2.35   48.13
loadBAM             11.47   0.56   12.03
acc_features         9.06   0.03    9.09
binGenome            8.62   0.06    8.69
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

ASpli.Rcheck/00install.out:


install for i386

* installing *source* package 'ASpli' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ASpli' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpli' as ASpli_1.2.3.zip
* DONE (ASpli)

ASpli.Rcheck/examples_i386/ASpli-Ex.timings:

nameusersystemelapsed
ASpli-package79.10 6.2485.32
AsDiscover-methods70.03 3.7173.75
DUreport51.31 2.8854.18
DUreport_DEXSeq104.50 3.73108.38
acc_AS48.62 1.8250.44
acc_DU41.82 1.2643.08
acc_counts41.45 1.9243.38
acc_features7.720.027.73
binGenome7.880.067.94
loadBAM10.39 0.2810.67
plotTopTags53.45 1.2354.69
readCounts47.58 0.7848.36

ASpli.Rcheck/examples_x64/ASpli-Ex.timings:

nameusersystemelapsed
ASpli-package82.81 6.0788.87
AsDiscover-methods75.77 3.8679.64
DUreport51.63 3.2354.86
DUreport_DEXSeq107.66 3.48111.17
acc_AS64.59 2.4367.17
acc_DU50.37 1.6552.03
acc_counts45.79 2.3548.13
acc_features9.060.039.09
binGenome8.620.068.69
loadBAM11.47 0.5612.03
plotTopTags60.00 1.8161.81
readCounts57.14 1.9359.08