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BioC 3.4: CHECK report for spkTools on tokay1

This page was generated on 2017-04-15 16:15:49 -0400 (Sat, 15 Apr 2017).

Package 1179/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spkTools 1.30.0
Matthew N McCall
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/spkTools
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: spkTools
Version: 1.30.0
Command: rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.30.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.30.0.tar.gz
StartedAt: 2017-04-15 00:59:35 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 01:01:34 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 118.9 seconds
RetCode: 0
Status:  OK  
CheckDir: spkTools.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.30.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out  && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.30.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/spkTools.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'spkTools/DESCRIPTION' ... OK
* this is package 'spkTools' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'spkTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
spkTools 15.22   0.06   15.28
spkAll   15.11   0.00   18.72
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
spkAll   12.01   0.04   12.06
spkTools 11.00   0.08   11.10
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.4-bioc/meat/spkTools.Rcheck/00check.log'
for details.


spkTools.Rcheck/00install.out:


install for i386

* installing *source* package 'spkTools' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'spkTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'spkTools' as spkTools_1.30.0.zip
* DONE (spkTools)

spkTools.Rcheck/examples_i386/spkTools-Ex.timings:

nameusersystemelapsed
SpikeInExpressSet-class0.140.000.14
plotSpkBox0.690.030.72
spkAccSD0.200.010.22
spkAll15.11 0.0018.72
spkAnova0.100.000.09
spkBal0.070.000.08
spkBox0.770.070.83
spkDensity0.110.030.14
spkGNN4.720.054.76
spkMA1.200.001.21
spkPair0.120.000.13
spkPairNS0.080.000.07
spkPot0.640.000.64
spkQuantile0.080.000.08
spkSlope0.080.000.08
spkTools15.22 0.0615.28
spkVar0.050.000.04
summarySpkBox0.560.000.57

spkTools.Rcheck/examples_x64/spkTools-Ex.timings:

nameusersystemelapsed
SpikeInExpressSet-class0.180.010.20
plotSpkBox0.880.020.90
spkAccSD0.250.000.25
spkAll12.01 0.0412.06
spkAnova0.080.000.08
spkBal0.090.000.10
spkBox0.850.050.89
spkDensity0.120.020.14
spkGNN3.220.003.22
spkMA1.310.031.34
spkPair0.110.000.11
spkPairNS0.140.000.14
spkPot0.710.000.70
spkQuantile0.070.000.08
spkSlope0.100.000.09
spkTools11.00 0.0811.10
spkVar0.060.000.06
summarySpkBox0.690.010.70