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BioC 3.4: BUILD BIN report for GWASTools on tokay1

This page was generated on 2017-04-15 16:16:56 -0400 (Sat, 15 Apr 2017).

Package 577/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GWASTools 1.20.0
Stephanie M. Gogarten , Adrienne Stilp
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/GWASTools
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GWASTools
Version: 1.20.0
Command: cd GWASTools.buildbin-libdir/GWASTools && zip -r ../../GWASTools_1.20.0.zip . & cd ../..
StartedAt: 2017-04-15 02:08:34 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 02:09:05 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 31.9 seconds
RetCode: 0
Status:  OK  
PackageFile: GWASTools_1.20.0.zip
PackageFileSize: 3.503 MiB

Command output

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###
### Running command:
###
###   cd GWASTools.buildbin-libdir/GWASTools && zip -r ../../GWASTools_1.20.0.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (284 bytes security) (deflated 29%)
  adding: data/ (324 bytes security) (stored 0%)
  adding: data/Rdata.rdb (284 bytes security) (deflated 22%)
  adding: data/Rdata.rds (284 bytes security) (stored 0%)
  adding: data/Rdata.rdx (284 bytes security) (stored 0%)
  adding: DESCRIPTION (284 bytes security) (deflated 57%)
  adding: doc/ (324 bytes security) (stored 0%)
  adding: doc/Affymetrix.pdf (284 bytes security) (deflated 8%)
  adding: doc/Affymetrix.R (284 bytes security) (deflated 76%)
  adding: doc/Affymetrix.Rnw (284 bytes security) (deflated 69%)
  adding: doc/DataCleaning.pdf (284 bytes security) (deflated 23%)
  adding: doc/DataCleaning.R (284 bytes security) (deflated 78%)
  adding: doc/DataCleaning.Rnw (284 bytes security) (deflated 71%)
  adding: doc/Formats.pdf (284 bytes security) (deflated 9%)
  adding: doc/Formats.R (284 bytes security) (deflated 77%)
  adding: doc/Formats.Rnw (284 bytes security) (deflated 67%)
  adding: doc/index.html (284 bytes security) (deflated 72%)
  adding: help/ (324 bytes security) (stored 0%)
  adding: help/aliases.rds (284 bytes security) (stored 0%)
  adding: help/AnIndex (284 bytes security) (deflated 88%)
  adding: help/GWASTools.rdb (284 bytes security) (deflated 1%)
  adding: help/GWASTools.rdx (284 bytes security) (stored 0%)
  adding: help/paths.rds (284 bytes security) (stored 0%)
  adding: html/ (324 bytes security) (stored 0%)
  adding: html/00Index.html (284 bytes security) (deflated 91%)
  adding: html/R.css (284 bytes security) (deflated 75%)
  adding: INDEX (284 bytes security) (deflated 66%)
  adding: MD5 (284 bytes security) (deflated 52%)
  adding: Meta/ (324 bytes security) (stored 0%)
  adding: Meta/data.rds (284 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (284 bytes security) (deflated 0%)
  adding: Meta/links.rds (284 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (284 bytes security) (stored 0%)
  adding: Meta/package.rds (284 bytes security) (stored 0%)
  adding: Meta/Rd.rds (284 bytes security) (stored 0%)
  adding: Meta/vignette.rds (284 bytes security) (stored 0%)
  adding: NAMESPACE (284 bytes security) (deflated 68%)
  adding: NEWS.Rd (284 bytes security) (deflated 73%)
  adding: R/ (324 bytes security) (stored 0%)
  adding: R/GWASTools (284 bytes security) (deflated 41%)
  adding: R/GWASTools.rdb (284 bytes security) (deflated 23%)
  adding: R/GWASTools.rdx (284 bytes security) (deflated 1%)
  adding: unitTests/ (324 bytes security) (stored 0%)
  adding: unitTests/alleleFrequency_test.R (284 bytes security) (deflated 78%)
  adding: unitTests/allequal_test.R (284 bytes security) (deflated 41%)
  adding: unitTests/anomDetectBAF_test.R (284 bytes security) (deflated 73%)
  adding: unitTests/apartSnpSelection_test.R (284 bytes security) (deflated 57%)
  adding: unitTests/assocCoxPH_test.R (284 bytes security) (deflated 73%)
  adding: unitTests/assocRegression_test.R (284 bytes security) (deflated 84%)
  adding: unitTests/BAFfromClusterMeans_test.R (284 bytes security) (deflated 42%)
  adding: unitTests/BAFfromGenotypes_test.R (284 bytes security) (deflated 69%)
  adding: unitTests/batchChisqTest_test.R (284 bytes security) (deflated 84%)
  adding: unitTests/batchFisherTest_test.R (284 bytes security) (deflated 84%)
  adding: unitTests/checkGenotypeFile_test.R (284 bytes security) (deflated 87%)
  adding: unitTests/checkImputedDosageFile_test.R (284 bytes security) (deflated 91%)
  adding: unitTests/checkIntensityFile_test.R (284 bytes security) (deflated 83%)
  adding: unitTests/chromIntensityPlot_test.R (284 bytes security) (deflated 73%)
  adding: unitTests/convertNcdfGds_test.R (284 bytes security) (deflated 81%)
  adding: unitTests/createAffyIntensityFile_test.R (284 bytes security) (deflated 80%)
  adding: unitTests/createDataFile_test.R (284 bytes security) (deflated 88%)
  adding: unitTests/dupDosageCorAcrossDatasets_test.R (284 bytes security) (deflated 75%)
  adding: unitTests/duplicateDiscordanceAcrossDatasets_test.R (284 bytes security) (deflated 88%)
  adding: unitTests/duplicateDiscordance_test.R (284 bytes security) (deflated 80%)
  adding: unitTests/exactHWE_test.R (284 bytes security) (deflated 70%)
  adding: unitTests/findBAFvariance_test.R (284 bytes security) (deflated 63%)
  adding: unitTests/GdsGenotypeReader_test.R (284 bytes security) (deflated 85%)
  adding: unitTests/GdsIntensityReader_test.R (284 bytes security) (deflated 65%)
  adding: unitTests/GdsReader_test.R (284 bytes security) (deflated 76%)
  adding: unitTests/gdsSubsetCheck_test.R (284 bytes security) (deflated 88%)
  adding: unitTests/gdsSubset_test.R (284 bytes security) (deflated 94%)
  adding: unitTests/GenotypeData_test.R (284 bytes security) (deflated 81%)
  adding: unitTests/genotypeToCharacter_test.R (284 bytes security) (deflated 73%)
  adding: unitTests/getobj_test.R (284 bytes security) (deflated 26%)
  adding: unitTests/hetByScanChrom_test.R (284 bytes security) (deflated 69%)
  adding: unitTests/hetBySnpSex_test.R (284 bytes security) (deflated 66%)
  adding: unitTests/ibdPlot_test.R (284 bytes security) (deflated 57%)
  adding: unitTests/imputedDosageFile_test.R (284 bytes security) (deflated 90%)
  adding: unitTests/IntensityData_test.R (284 bytes security) (deflated 70%)
  adding: unitTests/MatrixGenotypeReader_test.R (284 bytes security) (deflated 70%)
  adding: unitTests/meanIntensityByScanChrom_test.R (284 bytes security) (deflated 76%)
  adding: unitTests/missingGenotypeByScanChrom_test.R (284 bytes security) (deflated 68%)
  adding: unitTests/missingGenotypeBySnpSex_test.R (284 bytes security) (deflated 71%)
  adding: unitTests/NcdfGenotypeReader_test.R (284 bytes security) (deflated 68%)
  adding: unitTests/NcdfIntensityReader_test.R (284 bytes security) (deflated 69%)
  adding: unitTests/NcdfReader_test.R (284 bytes security) (deflated 66%)
  adding: unitTests/pedigreeCheck_test.R (284 bytes security) (deflated 76%)
  adding: unitTests/pedigreeMaxUnrelated_test.R (284 bytes security) (deflated 86%)
  adding: unitTests/pedigreePairwiseRelatedness_test.R (284 bytes security) (deflated 78%)
  adding: unitTests/plinkUtils_test.R (284 bytes security) (deflated 81%)
  adding: unitTests/pseudoautoIntensityPlot_test.R (284 bytes security) (deflated 49%)
  adding: unitTests/qualityScoreByScan_test.R (284 bytes security) (deflated 65%)
  adding: unitTests/qualityScoreBySnp_test.R (284 bytes security) (deflated 69%)
  adding: unitTests/saveas_test.R (284 bytes security) (deflated 63%)
  adding: unitTests/ScanAnnotationDataFrame_test.R (284 bytes security) (deflated 64%)
  adding: unitTests/ScanAnnotationSQLite_test.R (284 bytes security) (deflated 67%)
  adding: unitTests/setMissingGenotypes_test.R (284 bytes security) (deflated 69%)
  adding: unitTests/SnpAnnotationDataFrame_test.R (284 bytes security) (deflated 72%)
  adding: unitTests/SnpAnnotationSQLite_test.R (284 bytes security) (deflated 68%)
  adding: unitTests/snpStats_test.R (284 bytes security) (deflated 62%)
  adding: unitTests/vcfWrite_test.R (284 bytes security) (deflated 83%)