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BioC 3.3: INSTALL report for zlibbioc on moscato2

This page was generated on 2016-10-13 12:49:55 -0700 (Thu, 13 Oct 2016).

Package 1210/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
zlibbioc 1.18.0
Bioconductor Package Maintainer
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/zlibbioc
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: zlibbioc
Version: 1.18.0
Command: rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/zlibbioc_1.18.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=zlibbioc.buildbin-libdir --merge-multiarch zlibbioc_1.18.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL zlibbioc_1.18.0.zip && rm zlibbioc_1.18.0.tar.gz zlibbioc_1.18.0.zip
StartedAt: 2016-10-12 18:46:18 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 18:47:01 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 42.9 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/zlibbioc_1.18.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=zlibbioc.buildbin-libdir --merge-multiarch zlibbioc_1.18.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL zlibbioc_1.18.0.zip  && rm zlibbioc_1.18.0.tar.gz zlibbioc_1.18.0.zip
###
##############################################################################
##############################################################################




install for i386

* installing *source* package 'zlibbioc' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/i386"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/e/biocbld/bbs-3.3-bioc/tmpdir/RtmpquA77y/R.INSTALL186853003878/zlibbioc/src/zlib-1.2.5'
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
C:/Rtools/mingw_32/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
C:/Rtools/mingw_32/bin/windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc
C:/Rtools/mingw_32/bin/gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
C:/Rtools/mingw_32/bin/strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-3.3-bioc/tmpdir/RtmpquA77y/R.INSTALL186853003878/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
            "E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/i386"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
C:/Rtools/mingw_32/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'zlibbioc' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/e/biocbld/bbs-3.3-bioc/tmpdir/RtmpEvwT8R/R.INSTALL22444653330/zlibbioc/src/zlib-1.2.5'
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
C:/Rtools/mingw_64/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
C:/Rtools/mingw_64/bin/windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc
C:/Rtools/mingw_64/bin/gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
C:/Rtools/mingw_64/bin/strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-3.3-bioc/tmpdir/RtmpEvwT8R/R.INSTALL22444653330/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
            "E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
C:/Rtools/mingw_64/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zlibbioc' as zlibbioc_1.18.0.zip
* DONE (zlibbioc)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'zlibbioc' successfully unpacked and MD5 sums checked