BioC 3.3: CHECK report for sscu on moscato2

Package: sscu

Version: 1.0.2

Command: rm -rf sscu.buildbin-libdir sscu.Rcheck && mkdir sscu.buildbin-libdir sscu.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sscu.buildbin-libdir sscu_1.0.2.tar.gz >sscu.Rcheck\00install.out 2>&1 && cp sscu.Rcheck\00install.out sscu-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=sscu.buildbin-libdir --install="check:sscu-install.out" --force-multiarch --no-vignettes --timings sscu_1.0.2.tar.gz

StartedAt: 2016-10-13 09:18:42 -0700 (Thu, 13 Oct 2016)

EndedAt: 2016-10-13 09:21:06 -0700 (Thu, 13 Oct 2016)

EllapsedTime: 145.0 seconds

RetCode: 0

Status:  OK

CheckDir: sscu.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf sscu.buildbin-libdir sscu.Rcheck && mkdir sscu.buildbin-libdir sscu.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sscu.buildbin-libdir sscu_1.0.2.tar.gz >sscu.Rcheck\00install.out 2>&1 && cp sscu.Rcheck\00install.out sscu-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=sscu.buildbin-libdir --install="check:sscu-install.out" --force-multiarch --no-vignettes --timings sscu_1.0.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/sscu.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sscu/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sscu' version '1.0.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sscu' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'sscu' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'sscu' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sscu' as sscu_1.0.2.zip
* DONE (sscu)

name	user	system	elapsed
genomic_gc3	0.64	0.00	0.64
optimal_codons	1.09	0.03	1.12
optimal_index	0.94	0.00	0.94
s_index	0.30	0.00	0.29

name	user	system	elapsed
genomic_gc3	0.74	0.01	0.74
optimal_codons	1.40	0.03	1.44
optimal_index	1.59	0.08	1.67
s_index	0.40	0.02	0.43