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BioC 3.3: CHECK report for ropls on moscato2

This page was generated on 2016-10-13 12:54:14 -0700 (Thu, 13 Oct 2016).

Package 1001/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ropls 1.4.6
Etienne A. Thevenot
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/ropls
Last Changed Rev: 122045 / Revision: 122332
Last Changed Date: 2016-10-07 07:50:37 -0700 (Fri, 07 Oct 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ropls
Version: 1.4.6
Command: rm -rf ropls.buildbin-libdir ropls.Rcheck && mkdir ropls.buildbin-libdir ropls.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ropls.buildbin-libdir ropls_1.4.6.tar.gz >ropls.Rcheck\00install.out 2>&1 && cp ropls.Rcheck\00install.out ropls-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=ropls.buildbin-libdir --install="check:ropls-install.out" --force-multiarch --no-vignettes --timings ropls_1.4.6.tar.gz
StartedAt: 2016-10-13 08:25:29 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 08:27:41 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 131.9 seconds
RetCode: 0
Status:  OK  
CheckDir: ropls.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ropls.buildbin-libdir ropls.Rcheck && mkdir ropls.buildbin-libdir ropls.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ropls.buildbin-libdir ropls_1.4.6.tar.gz >ropls.Rcheck\00install.out 2>&1 && cp ropls.Rcheck\00install.out ropls-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=ropls.buildbin-libdir --install="check:ropls-install.out" --force-multiarch --no-vignettes --timings ropls_1.4.6.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/ropls.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ropls/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ropls' version '1.4.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ropls' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

ropls.Rcheck/00install.out:


install for i386

* installing *source* package 'ropls' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'ropls'
Creating a generic function for 'plot' from package 'graphics' in package 'ropls'
Creating a generic function for 'fitted' from package 'stats' in package 'ropls'
Creating a generic function for 'coef' from package 'stats' in package 'ropls'
Creating a generic function for 'residuals' from package 'stats' in package 'ropls'
Creating a generic function for 'predict' from package 'stats' in package 'ropls'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ropls' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ropls' as ropls_1.4.6.zip
* DONE (ropls)

ropls.Rcheck/examples_i386/ropls-Ex.timings:

nameusersystemelapsed
coef.opls0.940.020.95
fitted.opls0.820.000.83
getLoadingMN0.780.030.84
getPcaVarVn0.110.030.14
getScoreMN0.860.021.19
getSubsetVi0.080.000.14
getSummaryDF0.890.010.90
getVipVn0.830.030.86
getWeightMN0.870.020.89
opls-class3.050.123.80
opls3.190.134.53
plot.opls1.230.171.88
predict.opls0.100.030.18
print.opls0.790.021.20
residuals.opls0.550.030.58
ropls-package1.870.042.48
show.opls0.720.000.95
strF0.010.000.02
tested0.110.020.12

ropls.Rcheck/examples_x64/ropls-Ex.timings:

nameusersystemelapsed
coef.opls1.150.001.15
fitted.opls0.980.031.56
getLoadingMN1.130.001.14
getPcaVarVn0.090.031.12
getScoreMN0.970.051.02
getSubsetVi0.150.030.28
getSummaryDF1.320.011.32
getVipVn0.950.040.99
getWeightMN1.370.012.09
opls-class3.320.114.09
opls3.470.113.99
plot.opls1.400.221.75
predict.opls0.160.030.26
print.opls1.480.022.19
residuals.opls0.810.011.34
ropls-package2.040.052.43
show.opls0.890.010.92
strF0.030.000.03
tested0.100.020.11