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BioC 3.3: CHECK report for rcellminer on moscato2

This page was generated on 2016-10-13 12:53:48 -0700 (Thu, 13 Oct 2016).

Package 940/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rcellminer 1.4.2
Augustin Luna , Vinodh Rajapakse
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/rcellminer
Last Changed Rev: 117513 / Revision: 122332
Last Changed Date: 2016-05-15 13:18:19 -0700 (Sun, 15 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ ERROR ] ERROR 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: rcellminer
Version: 1.4.2
Command: rm -rf rcellminer.buildbin-libdir rcellminer.Rcheck && mkdir rcellminer.buildbin-libdir rcellminer.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rcellminer.buildbin-libdir rcellminer_1.4.2.tar.gz >rcellminer.Rcheck\00install.out 2>&1 && cp rcellminer.Rcheck\00install.out rcellminer-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=rcellminer.buildbin-libdir --install="check:rcellminer-install.out" --force-multiarch --no-vignettes --timings rcellminer_1.4.2.tar.gz
StartedAt: 2016-10-13 07:57:05 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 07:57:27 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 22.0 seconds
RetCode: 1
Status:  ERROR  
CheckDir: rcellminer.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf rcellminer.buildbin-libdir rcellminer.Rcheck && mkdir rcellminer.buildbin-libdir rcellminer.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rcellminer.buildbin-libdir rcellminer_1.4.2.tar.gz >rcellminer.Rcheck\00install.out 2>&1 && cp rcellminer.Rcheck\00install.out rcellminer-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=rcellminer.buildbin-libdir --install="check:rcellminer-install.out" --force-multiarch --no-vignettes --timings rcellminer_1.4.2.tar.gz
###
##############################################################################
##############################################################################

rcellminer.Rcheck/00install.out:


install for i386

* installing *source* package 'rcellminer' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Error : .onLoad failed in loadNamespace() for 'rcdk', details:
  call: fun(libname, pkgname)
  error: 
=================
=================
This version of rCDK uses a CDK library that requires Java 1.8 or greater.

Please install Java 1.8 and let R know which Java to use by running the config tool:

sudo R CMD javareconf

Then you will need to re-install rJava.

# re install fromfrom R
# install.packages('rJava', type='source')

=================
=================
         
Error : package 'rcdk' could not be loaded
ERROR: lazy loading failed for package 'rcellminer'
* removing 'E:/biocbld/bbs-3.3-bioc/meat/rcellminer.buildbin-libdir/rcellminer'
Warning: running command 'E:/biocbld/bbs-3.3-bioc/R/bin/i386/Rcmd.exe INSTALL --library=rcellminer.buildbin-libdir rcellminer_1.4.2.tar.gz --no-multiarch' had status 1