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BioC 3.3: INSTALL report for kebabs on moscato2

This page was generated on 2016-10-13 12:53:19 -0700 (Thu, 13 Oct 2016).

Package 614/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
kebabs 1.6.2
Ulrich Bodenhofer
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/kebabs
Last Changed Rev: 117513 / Revision: 122332
Last Changed Date: 2016-05-15 13:18:19 -0700 (Sun, 15 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: kebabs
Version: 1.6.2
Command: rm -rf kebabs.buildbin-libdir && mkdir kebabs.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/kebabs_1.6.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=kebabs.buildbin-libdir --merge-multiarch kebabs_1.6.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL kebabs_1.6.2.zip && rm kebabs_1.6.2.tar.gz kebabs_1.6.2.zip
StartedAt: 2016-10-12 18:53:15 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 18:58:17 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 301.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf kebabs.buildbin-libdir && mkdir kebabs.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/kebabs_1.6.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=kebabs.buildbin-libdir --merge-multiarch kebabs_1.6.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL kebabs_1.6.2.zip  && rm kebabs_1.6.2.tar.gz kebabs_1.6.2.zip
###
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install for i386

* installing *source* package 'kebabs' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c Biostrings_stubs.c -o Biostrings_stubs.o
C:/Rtools/mingw_32/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ByteStringVector.c -o ByteStringVector.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c ExplicitRepC.cpp -o ExplicitRepC.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c FeatureWeightsPosDepC.cpp -o FeatureWeightsPosDepC.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c GappyPairC.cpp -o GappyPairC.o
C:/Rtools/mingw_32/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c KernelUtils.cpp -o KernelUtils.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c MismatchC.cpp -o MismatchC.o
MismatchC.cpp: In function 'SEXPREC* getMismatchKernelMatrix(Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, int, int, bool, bool, int, alphaInfo*)':
MismatchC.cpp:432:41: warning: 'currValSqrt' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     km(i,j) = kernelVal / currValSqrt;
                                         ^
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c MotifC.cpp -o MotifC.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c PredictionC.cpp -o PredictionC.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c PredictionProfileC.cpp -o PredictionProfileC.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c R_init_kebabs.cpp -o R_init_kebabs.o
C:/Rtools/mingw_32/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c Rsvm.c -o Rsvm.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c SparseMatrixHash.cpp -o SparseMatrixHash.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c SpectrumC.cpp -o SpectrumC.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c SymmetricPairC.cpp -o SymmetricPairC.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c Utils.cpp -o Utils.o
C:/Rtools/mingw_32/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c XVector_stubs.c -o XVector_stubs.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c svm.cpp -o svm.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o kebabs.dll tmp.def Biostrings_stubs.o ByteStringVector.o ExplicitRepC.o FeatureWeightsPosDepC.o GappyPairC.o IRanges_stubs.o KernelUtils.o MismatchC.o MotifC.o PredictionC.o PredictionProfileC.o R_init_kebabs.o Rsvm.o SparseMatrixHash.o SpectrumC.o SymmetricPairC.o Utils.o XVector_stubs.o svm.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/kebabs.buildbin-libdir/kebabs/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'kebabs' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c Biostrings_stubs.c -o Biostrings_stubs.o
C:/Rtools/mingw_64/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ByteStringVector.c -o ByteStringVector.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c ExplicitRepC.cpp -o ExplicitRepC.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c FeatureWeightsPosDepC.cpp -o FeatureWeightsPosDepC.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c GappyPairC.cpp -o GappyPairC.o
C:/Rtools/mingw_64/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c KernelUtils.cpp -o KernelUtils.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c MismatchC.cpp -o MismatchC.o
MismatchC.cpp: In function 'SEXPREC* getMismatchKernelMatrix(Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, int, int, bool, bool, int, alphaInfo*)':
MismatchC.cpp:432:41: warning: 'currValSqrt' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     km(i,j) = kernelVal / currValSqrt;
                                         ^
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c MotifC.cpp -o MotifC.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c PredictionC.cpp -o PredictionC.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c PredictionProfileC.cpp -o PredictionProfileC.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c R_init_kebabs.cpp -o R_init_kebabs.o
C:/Rtools/mingw_64/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c Rsvm.c -o Rsvm.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c SparseMatrixHash.cpp -o SparseMatrixHash.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c SpectrumC.cpp -o SpectrumC.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c SymmetricPairC.cpp -o SymmetricPairC.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c Utils.cpp -o Utils.o
C:/Rtools/mingw_64/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c XVector_stubs.c -o XVector_stubs.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"E:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/XVector/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c svm.cpp -o svm.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o kebabs.dll tmp.def Biostrings_stubs.o ByteStringVector.o ExplicitRepC.o FeatureWeightsPosDepC.o GappyPairC.o IRanges_stubs.o KernelUtils.o MismatchC.o MotifC.o PredictionC.o PredictionProfileC.o R_init_kebabs.o Rsvm.o SparseMatrixHash.o SpectrumC.o SymmetricPairC.o Utils.o XVector_stubs.o svm.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/kebabs.buildbin-libdir/kebabs/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'kebabs' as kebabs_1.6.2.zip
* DONE (kebabs)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'kebabs' successfully unpacked and MD5 sums checked