Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H [I] J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.3: BUILD BIN report for inveRsion on oaxaca

This page was generated on 2016-10-13 12:57:36 -0700 (Thu, 13 Oct 2016).

Package 595/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
inveRsion 1.20.0
Alejandro Caceres
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/inveRsion
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: inveRsion
Version: 1.20.0
Command: rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh inveRsion_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R inveRsion.buildbin-libdir
StartedAt: 2016-10-13 07:43:13 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 07:43:22 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 8.5 seconds
RetCode: 0
Status:  OK 
PackageFile: inveRsion_1.20.0.tgz
PackageFileSize: 526.5 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh inveRsion_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R inveRsion.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=inveRsion.buildbin-libdir inveRsion_1.20.0.tar.gz'
>>>>>>> 

* installing *source* package ‘inveRsion’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c init_inveRsion.c -o init_inveRsion.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c inversionModel.c -o inversionModel.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c writeGenoDat.c -o writeGenoDat.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o inveRsion.so init_inveRsion.o inversionModel.o writeGenoDat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/inveRsion.buildbin-libdir/inveRsion/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘inveRsion’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (inveRsion)


>>>>>>> 
>>>>>>> FIXING LINKS FOR inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"