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BioC 3.3: BUILD report for gprege on zin2

This page was generated on 2016-10-13 12:43:10 -0700 (Thu, 13 Oct 2016).

Package 509/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gprege 1.16.0
Alfredo Kalaitzis
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/gprege
Last Changed Rev: 118171 / Revision: 122332
Last Changed Date: 2016-06-03 15:10:37 -0700 (Fri, 03 Jun 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: gprege
Version: 1.16.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gprege
StartedAt: 2016-10-12 20:18:10 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 20:18:15 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 5.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gprege
###
##############################################################################
##############################################################################


* checking for file ‘gprege/DESCRIPTION’ ... OK
* preparing ‘gprege’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: gptk
Loading required package: Matrix
Loading required package: fields
Loading required package: spam
Loading required package: grid
Spam version 1.4-0 (2016-08-29) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: ‘spam’

The following objects are masked from ‘package:base’:

    backsolve, forwardsolve

Loading required package: maps

Error: processing vignette 'gprege_quick.Rnw' failed with diagnostics:
 chunk 7 
Error in which(DGatta_labels_byTSNItop100) : 
  object 'DGatta_labels_byTSNItop100' not found
Execution halted