gespeR 1.4.2
Fabian Schmich
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/gespeR | | Last Changed Rev: 117513 / Revision: 122332 | | Last Changed Date: 2016-05-15 13:18:19 -0700 (Sun, 15 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf gespeR.buildbin-libdir gespeR.Rcheck && mkdir gespeR.buildbin-libdir gespeR.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=gespeR.buildbin-libdir gespeR_1.4.2.tar.gz >gespeR.Rcheck\00install.out 2>&1 && cp gespeR.Rcheck\00install.out gespeR-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=gespeR.buildbin-libdir --install="check:gespeR-install.out" --force-multiarch --no-vignettes --timings gespeR_1.4.2.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/gespeR.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gespeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gespeR' version '1.4.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gespeR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.gespeR.cv: no visible global function definition for 'coef'
.select.model: no visible global function definition for 'predict'
concordance: no visible global function definition for 'cor'
lasso.rand: no visible global function definition for 'runif'
plot.gespeR: no visible global function definition for 'hist'
stability.selection: no visible global function definition for 'lm'
Phenotypes,character: no visible global function definition for
'read.delim'
Undefined global functions or variables:
coef cor hist lm predict read.delim runif
Consider adding
importFrom("graphics", "hist")
importFrom("stats", "coef", "cor", "lm", "predict", "runif")
importFrom("utils", "read.delim")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
gespeR-package 6.71 0.11 50.73
gespeR-class 0.45 0.01 20.53
stability-methods 0.11 0.02 8.83
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
gespeR-package 8.61 0.15 46.27
gespeR-class 0.36 0.00 12.40
stability-methods 0.19 0.00 8.95
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'E:/biocbld/bbs-3.3-bioc/meat/gespeR.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'gespeR' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'as.data.frame' from package 'base' in package 'gespeR'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'gespeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gespeR' as gespeR_1.4.2.zip
* DONE (gespeR)